GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000535-TA|BGIBMGA000535-PA|IPR008937|Ras guanine
nucleotide exchange factor, IPR001895|Guanine-nucleotide dissociation
stimulator CDC25
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0265 - 1754861-1755063,1755186-1755360,1755558-1755653,175...    32   1.0  
11_06_0766 - 27115441-27115760,27115878-27116025,27116213-271174...    31   1.4  
11_06_0286 + 21945699-21946213,21946255-21947542                       30   4.1  
12_02_0718 + 22491241-22491897,22491989-22492126,22493017-224931...    29   9.6  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    29   9.6  

>02_01_0265 -
           1754861-1755063,1755186-1755360,1755558-1755653,
           1756110-1756256,1756343-1756511,1756661-1756812,
           1756898-1756968,1757064-1757247,1757332-1757523,
           1757664-1757771
          Length = 498

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 141 AAEHMESVRVEMSTTLEKLLDKLTALEQYEESLVDITQVSSLDQLSQGDILTLGLTPVEL 200
           A   +E  +V++++ +++++    AL + E+SL +I   + ++Q+  G  +       EL
Sbjct: 8   AKSELEQFKVDIASAMKQMVSLDKALGKKEKSLDNIR--NQIEQIQSGIAMKNDEMGTEL 65

Query: 201 ANQLTIVELHRLSFVGPE 218
            +QLT  E   LS + PE
Sbjct: 66  IDQLTSEERDLLSRLNPE 83


>11_06_0766 -
           27115441-27115760,27115878-27116025,27116213-27117417,
           27117510-27117753,27120181-27120357
          Length = 697

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 12/151 (7%)

Query: 65  VKAIPNHPYTNCTTEKSDIEYRDGQIGKAEVKDLVEKELNDMIALVRVLRQWTSMFPYDF 124
           +K++  H   NC  +KS     D Q    + + L  K  ++ IAL R           ++
Sbjct: 379 LKSVGLHFLGNCLGKKSKTVSSDHQRSLLQNETL--KSFSESIALDRHNPDLIFDMGVEY 436

Query: 125 RDDRVMALVRSITQRCAAEHMESVRVEMSTTLEKLLDKLTALEQYEESLVDITQVSSLDQ 184
            + R M    +   RCA E+++++   +S     L   L+A ++Y E+  ++   ++LD+
Sbjct: 437 AEQRNM----NAALRCAKEYIDAIGGSVSKGWRLLALVLSAQQRYPEA--EVATNAALDE 490

Query: 185 ---LSQGDILTL-GLTPVELANQLTIVELHR 211
              L QG +L+L     V  ++ +  VE +R
Sbjct: 491 TAKLDQGSLLSLKAKLKVAQSSPMEAVEAYR 521


>11_06_0286 + 21945699-21946213,21946255-21947542
          Length = 600

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%)

Query: 226 PIHPPQSTSACKTSISLHHIDTKCTRNLEAYADWFNRLSYLVATDI---LKGVKSKYRAR 282
           P+H   +T A K     H ++T+ + +L  +   FN L    +  I    + +    R  
Sbjct: 203 PVHGFITTIARKQ----HIVETRLSHHLARHFSIFNDLRLRSSDGIHTFFQSLSRSSRVS 258

Query: 283 VIEQWVMTGRECFNLGNFNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLE-LCVE 341
           +++   + G +CF + N   L  I S + +   + LKKT           LR+LE L + 
Sbjct: 259 LLKVLDLEGSQCFGVKNQRYLKDICSKMLLLKYLSLKKTEITQLPSEINCLRELEVLDIR 318

Query: 342 PTGNHARLSGNRVNFEKCALLSKHVST 368
            T   A  + N +  +   LL+ H+ +
Sbjct: 319 ETKVPANATVNVLLLKLKRLLAGHIDS 345


>12_02_0718 +
           22491241-22491897,22491989-22492126,22493017-22493142,
           22493389-22493493,22493650-22494046,22494144-22494273,
           22494358-22494652,22494736-22495005
          Length = 705

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 10/92 (10%)

Query: 125 RDDRVMALVRSITQRCAAEHMESVRVEMSTTLEKLLDKLTALEQYEESLVDITQVSSLDQ 184
           RD +   LV     R  A H  ++RV     L +LL    ALE+     +D++  +SLD 
Sbjct: 38  RDRKACRLVSRAFARAEAAHRRALRVLRREPLARLLRAFRALER-----LDLSACASLDD 92

Query: 185 LSQGDILTLGLTPVELANQLTIVELHRLSFVG 216
            S    L   L+  +LA  +  V L R S VG
Sbjct: 93  AS----LAAALSGADLAG-VRRVCLARASGVG 119


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 1/115 (0%)

Query: 116  WTSMFPYDFRDDRVMALVRSITQRCAAEHMESVRVEMSTTLEKLLDKLTALE-QYEESLV 174
            +TS+   +FRD +VM L  S+    + E ++ VR+   ++L    + +  +E Q  E L 
Sbjct: 1212 FTSIKFLEFRDSKVMYLPSSLKNLSSLERIKFVRIPNLSSLPDFPNSIQQIEIQDCECLK 1271

Query: 175  DITQVSSLDQLSQGDILTLGLTPVELANQLTIVELHRLSFVGPEEFVQTFAPIHP 229
               Q  + +   + + +   L  V   ++     +HR   VG   + +   P  P
Sbjct: 1272 RSCQAPNGENWQKIECIRWKLIEVSKPDESIAWFIHRYDKVGIAAYPKKLQPGQP 1326


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,118,361
Number of Sequences: 37544
Number of extensions: 395976
Number of successful extensions: 978
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 5
length of query: 433
length of database: 14,793,348
effective HSP length: 84
effective length of query: 349
effective length of database: 11,639,652
effective search space: 4062238548
effective search space used: 4062238548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)