GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000535-TA|BGIBMGA000535-PA|IPR008937|Ras guanine
nucleotide exchange factor, IPR001895|Guanine-nucleotide dissociation
stimulator CDC25
         (433 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical pr...   117   2e-26
Z69664-9|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical pr...    65   8e-11
Z69664-8|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr...    65   8e-11
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p...    65   8e-11
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p...    65   8e-11
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C...    65   8e-11
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B...    65   8e-11
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A...    65   8e-11
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.     65   8e-11
U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical pr...    60   3e-09
Z70752-4|CAA94755.3|  654|Caenorhabditis elegans Hypothetical pr...    48   1e-05
AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical ...    47   3e-05
AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical ...    47   3e-05
Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical pr...    38   0.010
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    34   0.23 
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    34   0.23 
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    32   0.69 
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    32   0.69 
Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical pr...    31   1.6  
Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...    30   3.7  
AL132898-19|CAC14411.2|  417|Caenorhabditis elegans Hypothetical...    30   3.7  
AL110500-7|CAB54490.1|  489|Caenorhabditis elegans Hypothetical ...    29   6.4  
AL132860-15|CAB60497.1|  619|Caenorhabditis elegans Hypothetical...    29   8.5  

>U58746-7|AAB00628.2|  461|Caenorhabditis elegans Hypothetical
           protein R05G6.10 protein.
          Length = 461

 Score =  117 bits (281), Expect = 2e-26
 Identities = 78/246 (31%), Positives = 131/246 (53%), Gaps = 24/246 (9%)

Query: 109 LVRVLRQWTSMFPYDFRDDRVMALVRSITQRCAAEHM-ESVRVEMSTTLEKLLDKLTALE 167
           ++R+  +W +  PYDF+ + +   +  + + CA +   +    E+ +TL   L+KL   +
Sbjct: 106 ILRLCSEWATNIPYDFKTEYMRTRLNELLRLCAVDKTYQQKTTELQSTLRSSLNKL---D 162

Query: 168 QYEESLVDITQVSS--LDQLSQGDILTLGLTPV-----ELANQLTIVELHRLSFVGPEEF 220
           +YE+++ ++ +  S   +   Q D +T GL  +      +A QLT +E+ R S VG +E 
Sbjct: 163 RYEKAVANLQKALSENTNLPEQSDSMT-GLFVLCNDAKTVAQQLTHIEMERFSMVGVDEI 221

Query: 221 VQTFAPIHPPQSTSACKTSISLHHIDTKCT-RNLEAYADWFNRLSYLVATDILKGVKSKY 279
           VQ+ A    P S       I  H  + + T  ++  Y +WFNRLS   A ++LK  K + 
Sbjct: 222 VQSLAS--DPLS------EIGRHSKNKEGTISSISFYIEWFNRLSAFAAIEVLKQTKKRN 273

Query: 280 RARVIEQWVMTGRECFNLGNFNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLELC 339
           R  V E  +   +EC  +GNFNS+MAI++ L++  V RLKKTW R       +L  L+  
Sbjct: 274 RVAVFEFMIDIAKECCEIGNFNSMMAIVAGLSLPAVSRLKKTWCRVEKA---KLEILQHQ 330

Query: 340 VEPTGN 345
           ++P+GN
Sbjct: 331 LDPSGN 336


>Z69664-9|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical protein
            T14G10.2b protein.
          Length = 1311

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 241  SLHHIDTKC-TRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGN 299
            +L  +D+K  +  LE +   FNR  + VAT+I      + RA++I++++   R C +L N
Sbjct: 921  NLFKLDSKYGSPKLEEFEQLFNREMWWVATEICTERHVQKRAKLIKKFIKVARYCRDLRN 980

Query: 300  FNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLELCVEPTGNHAR 348
            FNS+ AI+S L+   V RL  +W R S+   + L ++   V+P+ N ++
Sbjct: 981  FNSMFAIMSGLDKPAVRRLHSSWERVSSKYIRMLDEIHQLVDPSRNMSK 1029


>Z69664-8|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
            T14G10.2a protein.
          Length = 1470

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 241  SLHHIDTKC-TRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGN 299
            +L  +D+K  +  LE +   FNR  + VAT+I      + RA++I++++   R C +L N
Sbjct: 921  NLFKLDSKYGSPKLEEFEQLFNREMWWVATEICTERHVQKRAKLIKKFIKVARYCRDLRN 980

Query: 300  FNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLELCVEPTGNHAR 348
            FNS+ AI+S L+   V RL  +W R S+   + L ++   V+P+ N ++
Sbjct: 981  FNSMFAIMSGLDKPAVRRLHSSWERVSSKYIRMLDEIHQLVDPSRNMSK 1029


>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
            protein T14G10.2b protein.
          Length = 1311

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 241  SLHHIDTKC-TRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGN 299
            +L  +D+K  +  LE +   FNR  + VAT+I      + RA++I++++   R C +L N
Sbjct: 921  NLFKLDSKYGSPKLEEFEQLFNREMWWVATEICTERHVQKRAKLIKKFIKVARYCRDLRN 980

Query: 300  FNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLELCVEPTGNHAR 348
            FNS+ AI+S L+   V RL  +W R S+   + L ++   V+P+ N ++
Sbjct: 981  FNSMFAIMSGLDKPAVRRLHSSWERVSSKYIRMLDEIHQLVDPSRNMSK 1029


>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
            protein T14G10.2a protein.
          Length = 1470

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 241  SLHHIDTKC-TRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGN 299
            +L  +D+K  +  LE +   FNR  + VAT+I      + RA++I++++   R C +L N
Sbjct: 921  NLFKLDSKYGSPKLEEFEQLFNREMWWVATEICTERHVQKRAKLIKKFIKVARYCRDLRN 980

Query: 300  FNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLELCVEPTGNHAR 348
            FNS+ AI+S L+   V RL  +W R S+   + L ++   V+P+ N ++
Sbjct: 981  FNSMFAIMSGLDKPAVRRLHSSWERVSSKYIRMLDEIHQLVDPSRNMSK 1029


>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
           protein.
          Length = 1347

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 241 SLHHIDTKC-TRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGN 299
           +L  +D+K  +  LE +   FNR  + VAT+I      + RA++I++++   R C +L N
Sbjct: 798 NLFKLDSKYGSPKLEEFEQLFNREMWWVATEICTERHVQKRAKLIKKFIKVARYCRDLRN 857

Query: 300 FNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLELCVEPTGNHAR 348
           FNS+ AI+S L+   V RL  +W R S+   + L ++   V+P+ N ++
Sbjct: 858 FNSMFAIMSGLDKPAVRRLHSSWERVSSKYIRMLDEIHQLVDPSRNMSK 906


>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
            protein.
          Length = 1311

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 241  SLHHIDTKC-TRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGN 299
            +L  +D+K  +  LE +   FNR  + VAT+I      + RA++I++++   R C +L N
Sbjct: 921  NLFKLDSKYGSPKLEEFEQLFNREMWWVATEICTERHVQKRAKLIKKFIKVARYCRDLRN 980

Query: 300  FNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLELCVEPTGNHAR 348
            FNS+ AI+S L+   V RL  +W R S+   + L ++   V+P+ N ++
Sbjct: 981  FNSMFAIMSGLDKPAVRRLHSSWERVSSKYIRMLDEIHQLVDPSRNMSK 1029


>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
            protein.
          Length = 1470

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 241  SLHHIDTKC-TRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGN 299
            +L  +D+K  +  LE +   FNR  + VAT+I      + RA++I++++   R C +L N
Sbjct: 921  NLFKLDSKYGSPKLEEFEQLFNREMWWVATEICTERHVQKRAKLIKKFIKVARYCRDLRN 980

Query: 300  FNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLELCVEPTGNHAR 348
            FNS+ AI+S L+   V RL  +W R S+   + L ++   V+P+ N ++
Sbjct: 981  FNSMFAIMSGLDKPAVRRLHSSWERVSSKYIRMLDEIHQLVDPSRNMSK 1029


>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
          Length = 1470

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 36/109 (33%), Positives = 63/109 (57%), Gaps = 1/109 (0%)

Query: 241  SLHHIDTKC-TRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGN 299
            +L  +D+K  +  LE +   FNR  + VAT+I      + RA++I++++   R C +L N
Sbjct: 921  NLFKLDSKYGSPKLEEFEQLFNREMWWVATEICTERHVQKRAKLIKKFIKVARYCRDLRN 980

Query: 300  FNSLMAIISALNMSPVMRLKKTWSRTSAVCGQQLRQLELCVEPTGNHAR 348
            FNS+ AI+S L+   V RL  +W R S+   + L ++   V+P+ N ++
Sbjct: 981  FNSMFAIMSGLDKPAVRRLHSSWERVSSKYIRMLDEIHQLVDPSRNMSK 1029


>U42834-3|AAA83583.2|  860|Caenorhabditis elegans Hypothetical
           protein F28B4.2 protein.
          Length = 860

 Score = 60.1 bits (139), Expect = 3e-09
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 253 LEAYADWFNRLSYLVATDI-LKGVKSKYRARVIEQWVMTGRECFNLGNFNSLMAIISALN 311
           ++A  + FN +S  V T I L   + +YRA++I +W+   RE   L NF+SL A++S+L 
Sbjct: 276 VKATIEQFNSVSQRVMTSIVLPDCRPEYRAKIISKWIDIARELRALKNFSSLKAVLSSLQ 335

Query: 312 MSPVMRLKKTWSRTSAVCGQQLRQLELCVE 341
             PV RLK  W+        Q R+L    E
Sbjct: 336 SEPVHRLKSAWNSVPNRSISQFRELSSIYE 365


>Z70752-4|CAA94755.3|  654|Caenorhabditis elegans Hypothetical
           protein F25B3.3 protein.
          Length = 654

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 28/84 (33%), Positives = 43/84 (51%)

Query: 253 LEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGNFNSLMAIISALNM 312
           LE     FN LS  V   IL     K RA ++ ++V   +    + NFN+LM+++  +  
Sbjct: 193 LERSISVFNNLSNWVQCMILNKTTPKERAEILVKFVHVAKHLRKINNFNTLMSVVGGITH 252

Query: 313 SPVMRLKKTWSRTSAVCGQQLRQL 336
           S V RL KT++  S    ++L QL
Sbjct: 253 SSVARLAKTYAVLSNDIKKELTQL 276


>AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4b protein.
          Length = 833

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 248 KCTRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGNFNSLMAII 307
           K ++NL  + + FN LS+ V T I+     K R R + ++V   +    + NFNS +AI+
Sbjct: 671 KKSKNLVNFTEQFNNLSFWVRTLIITQGTQKERERHMMKFVKIMKHLREMCNFNSYLAIL 730

Query: 308 SALNMSPVMRLKKTWSR 324
           SA+  +P+ RL+  WS+
Sbjct: 731 SAIMSTPLARLE--WSK 745


>AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4a protein.
          Length = 877

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 248 KCTRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGNFNSLMAII 307
           K ++NL  + + FN LS+ V T I+     K R R + ++V   +    + NFNS +AI+
Sbjct: 671 KKSKNLVNFTEQFNNLSFWVRTLIITQGTQKERERHMMKFVKIMKHLREMCNFNSYLAIL 730

Query: 308 SALNMSPVMRLKKTWSR 324
           SA+  +P+ RL+  WS+
Sbjct: 731 SAIMSTPLARLE--WSK 745


>Z30423-4|CAA83013.2| 1234|Caenorhabditis elegans Hypothetical protein
            T20G5.5 protein.
          Length = 1234

 Score = 38.3 bits (85), Expect = 0.010
 Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 252  NLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGNFNSLMAIISALN 311
            NL+     FN + +   T+IL   +   R  ++++++          +  ++ AI   L+
Sbjct: 1032 NLDLLVRRFNEVQHWSTTEILLATEEN-RMEILKKFISIATIAREYRDLLTVFAITLGLS 1090

Query: 312  MSPVMRLKKTWSRTSAVCGQQLRQLELCVEPTGNH 346
             + + RL  TWS+      +   +LE  ++PT NH
Sbjct: 1091 HTSISRLTLTWSKLPPASLKTFSELENLLDPTRNH 1125


>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
            exchange factorfor RAS protein.
          Length = 1413

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 18/134 (13%)

Query: 189  DILTLGLTPVELANQLTIVELHRLSFVGPEEFVQTFAPIHPPQSTSACKTSISLHHIDTK 248
            D+LTL   P+E+  QLT++       + P E V+          T A K   S   +   
Sbjct: 892  DLLTLH--PIEIGRQLTLLHSDLYRAIQPIELVEA-------AWTKAEKWRKSPQLLRLT 942

Query: 249  CTRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGNFNSLMAIIS 308
                L  Y  W +R   +V T+ L+   + +  RV+E  VM+  E   L NF  L+A  S
Sbjct: 943  DHSTLLTY--WVSRS--IVETESLEERMAMFN-RVLE--VMSVFE--ELHNFTGLVAFYS 993

Query: 309  ALNMSPVMRLKKTW 322
            ALN S + RLK  W
Sbjct: 994  ALNSSCIFRLKWCW 1007


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
            homolog protein 1 protein.
          Length = 1493

 Score = 33.9 bits (74), Expect = 0.23
 Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 18/134 (13%)

Query: 189  DILTLGLTPVELANQLTIVELHRLSFVGPEEFVQTFAPIHPPQSTSACKTSISLHHIDTK 248
            D+LTL   P+E+  QLT++       + P E V+          T A K   S   +   
Sbjct: 892  DLLTLH--PIEIGRQLTLLHSDLYRAIQPIELVEA-------AWTKAEKWRKSPQLLRLT 942

Query: 249  CTRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTGRECFNLGNFNSLMAIIS 308
                L  Y  W +R   +V T+ L+   + +  RV+E  VM+  E   L NF  L+A  S
Sbjct: 943  DHSTLLTY--WVSRS--IVETESLEERMAMFN-RVLE--VMSVFE--ELHNFTGLVAFYS 993

Query: 309  ALNMSPVMRLKKTW 322
            ALN S + RLK  W
Sbjct: 994  ALNSSCIFRLKWCW 1007


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
           protein Y39A1C.2 protein.
          Length = 1066

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 151 EMSTTLEKLLDKLTALEQYEESLVDITQVSSLDQLSQGDILTLGLTP----VELANQLTI 206
           E+S    +L   LT +++YE  + D++   S+D+   G I T+ L P    + + N+  I
Sbjct: 816 ELSQLDPELYRSLTFVKRYEGEMADLSLTFSVDEDFMGKISTVDLVPSGRTISVTNENKI 875

Query: 207 VELHRLS 213
             +HR++
Sbjct: 876 DYVHRMA 882


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 151 EMSTTLEKLLDKLTALEQYEESLVDITQVSSLDQLSQGDILTLGLTP----VELANQLTI 206
           E+S    +L   LT +++YE  + D++   S+D+   G I T+ L P    + + N+  I
Sbjct: 404 ELSQLDPELYRSLTFVKRYEGEMADLSLTFSVDEDFMGKISTVDLVPSGRTISVTNENKI 463

Query: 207 VELHRLS 213
             +HR++
Sbjct: 464 DYVHRMA 470


>Z83103-3|CAB05473.1|  376|Caenorhabditis elegans Hypothetical
           protein D1025.3 protein.
          Length = 376

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 143 EHMESVRVEMSTTLEKLLDKLTALEQYEES----LVDITQVSSLDQLSQGDILTLGLTPV 198
           EH+  +R++ +   ++ L++  A++Q++ +    L D+  + S+ Q S  +     +T +
Sbjct: 208 EHLNHIRIKNTNFNQEQLEQFVAMDQWKHAKSMFLEDLNDI-SVAQFSHFETFWTNVTRL 266

Query: 199 ELANQLTIVE--LHRLSFVGPEEFVQTFAPIHPPQSTSACKTSISLHHIDT 247
           E  +   +++  + R S  G    V T  PI P Q +      +    IDT
Sbjct: 267 EPVDAWNVIKSYIKRNSPRGAFFHVGTANPIEPSQISDLFDVEVKNEPIDT 317


>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 7/111 (6%)

Query: 59  TVLTPGVKAIPNHPYTNCTTEKSDIEYRDGQIGKAEVKDLVEK---ELNDMIALVRVLRQ 115
           +V T  VK I          EK+ +   +  + + +   ++ K   E   + A  +V  +
Sbjct: 359 SVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDRQQAHAVIRKTALEAKQLQATQKVDIR 418

Query: 116 WTSMFPY-DFRDDRVMALVRS---ITQRCAAEHMESVRVEMSTTLEKLLDK 162
            T   P+ D   DRV+ LV +    T RC ++    +  E+  T++K LDK
Sbjct: 419 QTMADPFFDSVRDRVVGLVNNPINFTGRCVSQTESFIAKELKPTIDKYLDK 469


>AL132898-19|CAC14411.2|  417|Caenorhabditis elegans Hypothetical
           protein Y59A8B.13 protein.
          Length = 417

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 35  SNHASLTSDPTLLHGTGLSYYDLSTVLTPGVKAIPN-----HPYTNCTTEKSDIEYRD-G 88
           S+HA+ +S  T LH T  S   L T  T  V+ +P      +P   C  ++ D    + G
Sbjct: 298 SSHAT-SSSVTSLHNTSTS--SLMTSSTTYVEPLPQTYSEINPEFECEADEDDDYLMEAG 354

Query: 89  QIGKAEVKDLVEKELNDMI 107
           + G+AE ++  E+  ND+I
Sbjct: 355 EAGEAEAEEEEEEAENDVI 373


>AL110500-7|CAB54490.1|  489|Caenorhabditis elegans Hypothetical
           protein Y87G2A.7 protein.
          Length = 489

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 72  PYTNCTTEKSDIEYRDGQIGKAEVKDLVEKELNDMIALVR 111
           P T+  + +SD +Y DG+    E    ++KEL+ ++AL++
Sbjct: 53  PATHQESSESDSDYSDGEEATPEQWKELDKELDKVVALLK 92


>AL132860-15|CAB60497.1|  619|Caenorhabditis elegans Hypothetical
           protein Y56A3A.16 protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 14/88 (15%)

Query: 234 SACKTSISLHHIDTK--CTRNLEAYADWFNRLSYLVATDILKGVKSKYRARVIEQWVMTG 291
           +AC+ S+  H+I+ +  C R  + Y  +F  L +        G KS   ARV+ QW  T 
Sbjct: 346 AACRQSLHTHNINDREQCPRFCDYYGLFFCSLCH-------GGEKSILPARVLNQWSFT- 397

Query: 292 RECFNLGNFNSLMAIISALNMSPVMRLK 319
                L   +     + A+  SPV R++
Sbjct: 398 ----ELPVSDRAQRFLRAVRESPVFRIR 421


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,650,215
Number of Sequences: 27539
Number of extensions: 355975
Number of successful extensions: 975
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 37
length of query: 433
length of database: 12,573,161
effective HSP length: 83
effective length of query: 350
effective length of database: 10,287,424
effective search space: 3600598400
effective search space used: 3600598400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)