GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000535-TA|BGIBMGA000535-PA|IPR008937|Ras guanine
nucleotide exchange factor, IPR001895|Guanine-nucleotide dissociation
stimulator CDC25
         (433 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27230.1 68418.m03248 expressed protein  ; expression support...    32   0.65 

>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 32.3 bits (70), Expect = 0.65
 Identities = 22/92 (23%), Positives = 42/92 (45%)

Query: 136 ITQRCAAEHMESVRVEMSTTLEKLLDKLTALEQYEESLVDITQVSSLDQLSQGDILTLGL 195
           I +   A+  E  + E    LE+  +      + E+     T++ S++++S   ++ LGL
Sbjct: 84  IDESMKAKQSEFEKKEKDFDLEQKAEVEKRKREVEQLEKFTTRMESVERVSDEKLMELGL 143

Query: 196 TPVELANQLTIVELHRLSFVGPEEFVQTFAPI 227
              EL  ++  VE HR   V  ++    F P+
Sbjct: 144 RATELELKMEEVEKHRERIVAGDKLRGEFEPL 175


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,111,050
Number of Sequences: 28952
Number of extensions: 332357
Number of successful extensions: 800
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 799
Number of HSP's gapped (non-prelim): 1
length of query: 433
length of database: 12,070,560
effective HSP length: 83
effective length of query: 350
effective length of database: 9,667,544
effective search space: 3383640400
effective search space used: 3383640400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)