Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000534-TA|BGIBMGA000534-PA|undefined
         (72 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    24   2.1  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    23   3.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    23   6.5  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    23   6.5  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   6.5  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    22   8.6  

>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 24  DILEKQANKFTEEAYQLGCLQCTRVSS 50
           D LEK+  KF   AY++G +    + S
Sbjct: 411 DSLEKKVQKFNSLAYRIGIVPIAAIRS 437


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 878

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 9  YVRSDLTSHVTGWPADILEKQ-ANKFTEEAYQLGCLQCTRVSSE 51
          YV S +    +G   +IL K  A K TE+ + L  ++C R   E
Sbjct: 4  YVSSMIKYAQSGDSFNILIKDNAKKITEKQFSLAYVECPRFRRE 47


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 5   SLVNYVRSDLTSHVTGWPADILEKQANKFTEEAY 38
           SL    +S + S VTG P+D   +     T E +
Sbjct: 365 SLTGNAKSGIDSSVTGMPSDNYARVVESSTAEFF 398


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 38  YQLGCLQCTRVSSELKCARSLVRHT 62
           Y  GC    RV   L C RS+ RH+
Sbjct: 87  YASGCFG--RVERRLVCTRSISRHS 109


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
          Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 19 TGWPADILEKQANKFTEEAYQLG 41
          + W A+ +  +AN  T++ Y LG
Sbjct: 70 SAWYAESINAEANVITKQLYLLG 92


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 30  ANKFTEEAYQLGCLQCTRVSSELKCARSLVRH 61
           +N +TE   +LG ++     S+L+    +V+H
Sbjct: 739 SNNYTESDLELGIVRTFEFVSQLRRMAVIVKH 770


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,357
Number of Sequences: 5004
Number of extensions: 8522
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 2,362,478
effective HSP length: 52
effective length of query: 20
effective length of database: 2,102,270
effective search space: 42045400
effective search space used: 42045400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)