Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000534-TA|BGIBMGA000534-PA|undefined
         (72 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13045| Best HMM Match : Ras (HMM E-Value=0)                         31   0.10 
SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)                  29   0.41 
SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)                   29   0.41 
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)          28   1.3  
SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)          27   2.2  
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)                     25   6.7  
SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  
SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)         25   8.8  

>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
          Length = 629

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 5   SLVNYVRSDLTSHVTGWPADILEKQANKFTEE 36
           +L  +V   LT+HV GW  +  EKQ  + +EE
Sbjct: 539 ALNKFVDKSLTNHVVGWVTEGAEKQIQRLSEE 570


>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
          Length = 1009

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 3/33 (9%)

Query: 4   PSLVNYVRSDLTSHVTGWPADILEKQANKFTEE 36
           PSL+N    D       WP D LE  ANKF EE
Sbjct: 572 PSLINCCTIDWFQ---AWPEDALEMVANKFLEE 601


>SB_4492| Best HMM Match : PPI_Ypi1 (HMM E-Value=3.8)
          Length = 276

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 18  VTGWPADILEKQANKF---TEEAYQLGCLQCTRVS-SELKCARS 57
           V GWP DIL  + +KF   T++AY  GC +  R+   E +C  S
Sbjct: 136 VDGWPKDILVGRLSKFDIMTKDAYG-GCFEVERIRIRENQCQTS 178


>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
          Length = 1703

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 21  WPADILEKQANKFTEEA 37
           WP D LE  ANKF E+A
Sbjct: 668 WPEDALEMVANKFLEDA 684


>SB_27155| Best HMM Match : Dynein_heavy (HMM E-Value=1.1e-09)
          Length = 1248

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 18  VTGWPADILEKQANKFTEE 36
           +  WP D LE  ANKF +E
Sbjct: 160 IKAWPEDALEMVANKFLDE 178


>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
          Length = 1199

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 2   LTPSLVNYVRSDLTSHVTGWPADILEKQANKFTEEA 37
           L+ ++V  V SD+++H  G P   L KQ     +EA
Sbjct: 333 LSSAMVKKVLSDISAHYPGIPVKKLYKQYKAKEDEA 368


>SB_34096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1430

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 2    LTPSLVNYVRSDLTSHVTGWPADILEKQANKFTEEA 37
            L+ ++V  V SD+++H  G P   L KQ     +EA
Sbjct: 1264 LSSAMVKKVLSDISAHYPGIPVKKLYKQYKAKEDEA 1299


>SB_54041| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-11)
          Length = 1461

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 40  LGCLQCTRVSSELKCARSLVRHTEIQATLQ 69
           LG L  T +S ELK  RSLV H E+  +++
Sbjct: 807 LGLLSPTTLS-ELKVPRSLVTHREVIKSIE 835


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,801
Number of Sequences: 59808
Number of extensions: 63304
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 8
length of query: 72
length of database: 16,821,457
effective HSP length: 50
effective length of query: 22
effective length of database: 13,831,057
effective search space: 304283254
effective search space used: 304283254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)