GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000534-TA|BGIBMGA000534-PA|undefined
         (72 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory pro...    22   0.55 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   3.9  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    19   5.2  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    18   9.0  

>DQ855494-1|ABH88181.1|   99|Tribolium castaneum chemosensory
          protein 8 protein.
          Length = 99

 Score = 22.2 bits (45), Expect = 0.55
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)

Query: 8  NYVRSDLTSHVTGWPADILEKQANKFTEEAYQLGCLQCTRVSSELKCARSLVRHTE 63
          NY+   L   +   P D L  Q      E     C +C   S ++  AR + R+ +
Sbjct: 30 NYIEKQLLCALDKAPCDALGNQIKGALPEIIGKNCERCD--SRQVANARRIARYVQ 83


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 19.4 bits (38), Expect = 3.9
 Identities = 5/18 (27%), Positives = 12/18 (66%)

Query: 43  LQCTRVSSELKCARSLVR 60
           ++C R+ +E +C ++  R
Sbjct: 786 IKCKRIYNEKQCCKNCAR 803


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
          protein 10 protein.
          Length = 129

 Score = 19.0 bits (37), Expect = 5.2
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 28 KQANKFTEEAYQLGCLQCTRVSSE 51
          ++  K   +A   GC +CT    E
Sbjct: 61 EELKKALPDALHSGCSKCTEKQKE 84


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
          protein 11 protein.
          Length = 127

 Score = 18.2 bits (35), Expect = 9.0
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 44 QCTRVSSELKCARSLVRHTEIQATLQEQK 72
          +CT   +ELK       HTE     + QK
Sbjct: 55 KCTPDGAELKRHLPDALHTECSKCSETQK 83


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880
Number of Sequences: 317
Number of extensions: 386
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 72
length of database: 114,650
effective HSP length: 45
effective length of query: 27
effective length of database: 100,385
effective search space:  2710395
effective search space used:  2710395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)