GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000534-TA|BGIBMGA000534-PA|undefined
         (72 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical pr...    28   0.69 
Z32683-3|CAA83620.1|  124|Caenorhabditis elegans Hypothetical pr...    27   1.2  
Z48543-1|CAA88432.1|  645|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z79604-5|CAB97241.2|  731|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical pr...    25   6.5  

>Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical
           protein C17H1.9 protein.
          Length = 353

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 26  LEKQANKFTEEAYQ-LGCLQCTRVSSELKCARSLVRHTEIQATLQEQK 72
           LEKQ  K  E+  Q +  ++  RV  E +    LV+H E  A L E+K
Sbjct: 93  LEKQLEKINEKGEQDVKEVEQQRVKLEEQRTEDLVKHHESMANLSEKK 140


>Z32683-3|CAA83620.1|  124|Caenorhabditis elegans Hypothetical
          protein R07E5.5 protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 13 DLTSHVTGWPADILEKQANKFTEEAYQLGCLQCTRVSSELKCARSLVRHTEIQATLQEQK 72
          +L  H   +P   +EK  + + E+     CLQC   S E +       H E+   L E K
Sbjct: 42 ELVEHKKNYPRADVEKALSVYKEKDTIYKCLQC---SGEFRLKEDFDYHQELHKRLGELK 98


>Z48543-1|CAA88432.1|  645|Caenorhabditis elegans Hypothetical
           protein C18D1.1 protein.
          Length = 645

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 29  QANKFTEEAYQLGCLQCTRVSSELKCARSLVRHTEIQATLQEQK 72
           Q N+ TEE      L+CT  S + +  ++L  H E    + E K
Sbjct: 465 QRNQSTEEKMSSNLLECTDCSYKTRDPKNLDLHMERHIKMSEAK 508


>Z81459-1|CAB03827.3|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 14  LTSHVTGWPADILEKQANKFTEEA 37
           LT+H  GW  + + K   KF++EA
Sbjct: 329 LTTHYKGWVMENVHKDLVKFSQEA 352


>Z79604-5|CAB97241.2|  731|Caenorhabditis elegans Hypothetical
           protein C03H12.1 protein.
          Length = 731

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 14  LTSHVTGWPADILEKQANKFTEEA 37
           LT+H  GW  + + K   KF++EA
Sbjct: 329 LTTHYKGWVMENVHKDLVKFSQEA 352


>Z69384-5|CAA93419.2|  408|Caenorhabditis elegans Hypothetical
           protein T11G6.8 protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 25  ILEKQANKFTEEAYQLGCLQCTRVSSELKCA 55
           + EK  N F    YQ G ++C RV +E  CA
Sbjct: 250 VTEKDLNDFF---YQYGDIRCLRVLTEKGCA 277


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,264
Number of Sequences: 27539
Number of extensions: 46287
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 6
length of query: 72
length of database: 12,573,161
effective HSP length: 52
effective length of query: 20
effective length of database: 11,141,133
effective search space: 222822660
effective search space used: 222822660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)