GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000534-TA|BGIBMGA000534-PA|undefined
         (72 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    21   2.0  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    21   2.0  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    20   2.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    20   3.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   3.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    19   4.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   6.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    19   6.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   7.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       19   7.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   7.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   7.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    19   7.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    19   7.9  

>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
          protein.
          Length = 116

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 36 EAYQLGCLQCTRVSSE 51
          EA+Q  C +CT +  +
Sbjct: 69 EAFQTQCKKCTEIQKQ 84


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
          protein.
          Length = 116

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 6/16 (37%), Positives = 10/16 (62%)

Query: 36 EAYQLGCLQCTRVSSE 51
          EA+Q  C +CT +  +
Sbjct: 69 EAFQTQCKKCTEIQKQ 84


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
          protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 2.6
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 9  YVRSDLTSHVTGWPADILEKQANKFTEEAYQLGCLQCTRVSSELKCARSLV 59
          YV+  L   +     D++ K+  +   E     C +CT  S ++  A +L+
Sbjct: 32 YVQKQLHCILDRGHCDVIGKKIKELLPEVLNNHCNRCT--SRQIGIANTLI 80


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 1   MLTPSLVNY-VRSDLTSHVTGWPADILEKQANKF 33
           +L+  L N+ VRSD+        ADI+ K+A+ F
Sbjct: 501 VLSTILRNFRVRSDVKESEFRLQADIILKRADGF 534


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 3.4
 Identities = 6/22 (27%), Positives = 14/22 (63%)

Query: 13  DLTSHVTGWPADILEKQANKFT 34
           DLT+      AD+L+++  +++
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYS 359


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 10/28 (35%), Positives = 12/28 (42%)

Query: 31  NKFTEEAYQLGCLQCTRVSSELKCARSL 58
           NK  EE Y L    C      L+ A+ L
Sbjct: 354 NKLYEETYALAPAGCDLTIDNLRKAKYL 381


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1
          alpha protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 11 RSDLTSHVTGWPADILEKQANKFTEEAYQLG 41
          +S  T H+      I ++   KF +EA ++G
Sbjct: 20 KSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 50


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation
          factor-1alpha F2 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 11 RSDLTSHVTGWPADILEKQANKFTEEAYQLG 41
          +S  T H+      I ++   KF +EA ++G
Sbjct: 20 KSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG 50


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
          ion channel subunit protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 6  LVNYVRSDLTSHVTGWP 22
          L+NY  + L +H  G P
Sbjct: 45 LMNYENNQLPTHGKGTP 61


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 27  EKQANKFTEEAYQL 40
           E  A ++TEEAY +
Sbjct: 609 EAFAEEYTEEAYSV 622


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 16  SHVTGWPADILEKQANKFTEEAYQLGCLQCT 46
           S+  G  A +     NKF    Y+   + CT
Sbjct: 290 SYALGLGALVALGSYNKFNNNVYKDALIVCT 320


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 16  SHVTGWPADILEKQANKFTEEAYQLGCLQCT 46
           S+  G  A +     NKF    Y+   + CT
Sbjct: 343 SYALGLGALVALGSYNKFNNNVYKDALIVCT 373


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
          protein.
          Length = 492

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 18 VTGWPADILEKQANKF 33
          V G+P  +L+K+ + F
Sbjct: 47 VRGFPRTVLDKEVHVF 62


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
          protein.
          Length = 628

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 18 VTGWPADILEKQANKF 33
          V G+P  +L+K+ + F
Sbjct: 47 VRGFPRTVLDKEVHVF 62


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,070
Number of Sequences: 429
Number of extensions: 469
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 72
length of database: 140,377
effective HSP length: 46
effective length of query: 26
effective length of database: 120,643
effective search space:  3136718
effective search space used:  3136718
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)