GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000534-TA|BGIBMGA000534-PA|undefined
         (72 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ...    26   2.7  
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ...    26   2.7  
At5g48540.1 68418.m06001 33 kDa secretory protein-related contai...    26   3.5  
At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein ...    26   3.5  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    25   4.6  
At2g24560.1 68415.m02933 GDSL-motif lipase/hydrolase family prot...    25   6.1  
At1g29340.1 68414.m03587 armadillo/beta-catenin repeat family pr...    25   8.1  

>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 34  TEEAYQLGCLQCTRVSSELKCA 55
           TEE+YQL      R+SSE  CA
Sbjct: 165 TEESYQLQLALALRLSSEATCA 186


>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 34  TEEAYQLGCLQCTRVSSELKCA 55
           TEE+YQL      R+SSE  CA
Sbjct: 165 TEESYQLQLALALRLSSEATCA 186


>At5g48540.1 68418.m06001 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 263

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/31 (45%), Positives = 16/31 (51%)

Query: 26  LEKQANKFTEEAYQLGCLQCTRVSSELKCAR 56
           L K   K T      G +QCTR  SEL CA+
Sbjct: 175 LGKGKTKLTPFVTLNGLVQCTRDLSELDCAQ 205


>At1g26590.1 68414.m03239 zinc finger (C2H2 type) family protein
          contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 361

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 35 EEAYQLGCLQCTRVSSELKCARS-LVRHTEIQATLQE 70
          ++  Q+GC +C RV   LK  R  +  H E++  L +
Sbjct: 59 KQQQQVGCRECGRVFVSLKALRGHMACHGEVKKMLMD 95


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 13  DLTSHVTGWPADILEKQANKFTEEAYQLGCLQCTRVSSELKCAR--SLVRH 61
           DL  H   W  +  +K     T+  Y L C+ C   S  + CA   S V+H
Sbjct: 318 DLHPHPLYWTLEHSKKCKACGTKAGYDLNCIVCDDYSLCMTCATLPSKVKH 368


>At2g24560.1 68415.m02933 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL3 GI:15054386 from
           [Arabidopsis thaliana]; contains Pfam profile PF00657:
           GDSL-like Lipase/Acylhydrolase
          Length = 360

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 17  HVTGWPADILEKQANKFTEEAYQLGC 42
           H++G+   +L++  N F  E Y LGC
Sbjct: 192 HISGYQDFVLQRLDN-FVRELYSLGC 216


>At1g29340.1 68414.m03587 armadillo/beta-catenin repeat family
          protein / U-box domain-containing protein contains Pfam
          domain, PF00514: Armadillo/beta-catenin-like repeats
          and Pfam, PF04564: U-box domain
          Length = 729

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 40 LGCLQCTRVSSELKCARSLVRHTEIQATLQE 70
          + C    R S + K ARSL+R  EI   L E
Sbjct: 44 VSCFTSVRFSFQRKNARSLIRKIEIFVVLFE 74


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.127    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,450,044
Number of Sequences: 28952
Number of extensions: 42147
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 7
length of query: 72
length of database: 12,070,560
effective HSP length: 52
effective length of query: 20
effective length of database: 10,565,056
effective search space: 211301120
effective search space used: 211301120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)