Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000533-TA|BGIBMGA000533-PA|undefined
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    27   1.1  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   1.1  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    25   3.5  
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.6  
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   4.6  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   6.1  
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S...    25   6.1  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    24   8.0  

>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 70  IVITTTVIWQMIEDMSHLEIPIFRKSPKRREIETTNPLGVSTQIAFVHQKSALK-IVREK 128
           I  +   I + I+ +  +E P  +  PKR  ++    +  ST       KS LK  +   
Sbjct: 187 ITTSNRFIRKAIQSLVKIEFPTLKSYPKRTFLQVRKAIENSTTQCSATSKSELKEDIASD 246

Query: 129 EVIMSEMNQRKK 140
           ++I++ +N  K+
Sbjct: 247 QLILNNLNLIKQ 258


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)

Query: 24  IRNTTLKVNEESQMNMYLLTIGTHHF 49
           I+N+ + +NEES MN   +T+  +HF
Sbjct: 797 IQNSVVIINEESFMNNIDITVELYHF 822


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 21  PIRIRNTTLKVNEESQMNMYLLTIGTHHFDHLMAM-----CPHMAITHIQASPVIV 71
           P+ + + +   N+ S  ++   T+GTH F++ M +     C  +AI   + +PV++
Sbjct: 99  PVILVSGSPNTNDLSSGHLLHHTLGTHDFEYQMEIAKKLTCAAVAIKRAEDAPVMI 154


>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)

Query: 93  RKSPKRREIETTNPLGVSTQIAFVHQKSALKIVREKEVIMSEMNQR 138
           R  P  RE+  T+P   +  +AF  +K       + EV++S+  +R
Sbjct: 166 RLEPLEREVLVTDPSNPTKLVAFKQRKERYPGELQWEVLVSQDEER 211


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 64  IQASPVIVITTTVIWQMIEDMSHLEIPIFRKSPKRREIETTNPLGVSTQIAFV 116
           +   P +++  T  W+M+ D+S    P F  +P  +++     +G+S  I  V
Sbjct: 110 VYVGPQVLLANTFYWKMVVDVS----PAFSVNPIDKKLAIGLSVGLSCCILIV 158


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 107 LGVSTQIAFVHQKSALKIVREKEVIMSE 134
           L +   I F+H  S+  IVR+K+V+  E
Sbjct: 329 LSLVEYITFIHPSSSSPIVRKKKVLRYE 356


>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 88  EIPIFRKSPKRREIETTNPLGVSTQIAFVHQKSALKIVREKEVIMSEMNQRKKFE 142
           +IP  + S  +R       LGVS+++     K+  K V  +  I+S +  ++K +
Sbjct: 326 KIPAIKASLSQRVSSVMTELGVSSRLIMPTAKNFEKFVELQNSIVSLLELKRKVD 380


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/36 (30%), Positives = 22/36 (61%)

Query: 109 VSTQIAFVHQKSALKIVREKEVIMSEMNQRKKFELA 144
           +S  +  V+QK+ LK  +E+E  +++  + +K  LA
Sbjct: 625 ISAAMESVNQKNVLKAQKEEEERIAQQKREEKRRLA 660


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,747
Number of Sequences: 5004
Number of extensions: 20796
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 8
length of query: 145
length of database: 2,362,478
effective HSP length: 67
effective length of query: 78
effective length of database: 2,027,210
effective search space: 158122380
effective search space used: 158122380
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)