Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000533-TA|BGIBMGA000533-PA|undefined
         (145 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48650.1 68414.m05445 helicase domain-containing protein cont...    30   0.71 
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim...    27   5.0  
At3g26050.1 68416.m03244 expressed protein                             27   5.0  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    27   5.0  
At5g20110.1 68418.m02394 dynein light chain, putative similar to...    27   6.6  
At1g37150.3 68414.m04643 holocarboxylase synthetase 2 (HCS2.d) i...    27   6.6  
At1g37150.2 68414.m04642 holocarboxylase synthetase 2 (HCS2.d) i...    27   6.6  
At5g47690.1 68418.m05887 expressed protein                             26   8.7  
At4g27730.1 68417.m03985 oligopeptide transporter OPT family pro...    26   8.7  

>At1g48650.1 68414.m05445 helicase domain-containing protein
           contains similarity to DEIH-box RNA/DNA helicase
           [Arabidopsis thaliana] GI:5881579; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain, PF00035:
           Double-stranded RNA binding motif
          Length = 1197

 Score = 29.9 bits (64), Expect = 0.71
 Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 14/131 (10%)

Query: 15  TLRSIRPIRIRNTTLKVNEESQMNMYLLTIGTHHFDHLMAMCPHMAITHIQASPVIVITT 74
           TL +I   R + T L  N+E Q  +         FDH+ A+   M +   Q S ++VI+ 
Sbjct: 130 TLDNIDQWRFKLTMLLRNKEDQEVVSRERKDRRDFDHISALATRMGLHSRQYSKIVVISK 189

Query: 75  TVIWQMIEDMSHLEIPIFRKSPKRREIETTNPLGVSTQIAFVHQKSALKIVREKEVIMSE 134
             +     D+         K P+R   E   P G+ +++   H  S L    +K+ ++ E
Sbjct: 190 APLPNYRPDLDD-------KRPQR---EVVLPFGLQSEVD-AHLHSFLD---QKKTLIPE 235

Query: 135 MNQRKKFELAA 145
           M ++   E  A
Sbjct: 236 MPRQNSSESLA 246


>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
           similarity to RNA helicase RH26 [Arabidopsis thaliana]
           GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain; identical to cDNA DEAD box RNA helicase, RH26
           GI:3776024
          Length = 850

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 39  MYLLTIGTHHFDHLMAMCPHMAITHIQASPVIVITTTVIWQMIED-MSHLEIPIFRKSPK 97
           MY++     HF  L  +       ++    +I  TT ++ +++ D +S L + +      
Sbjct: 614 MYMIASLDRHFSLLHVLLKEHIADNVDYKVIIFCTTAMVTRLVADLLSQLSLNV------ 667

Query: 98  RREIETTNPLGVSTQIAFVHQKSALKIVREKEV 130
            REI +  P    T+++   +KS   I+   +V
Sbjct: 668 -REIHSRKPQSYRTRVSDEFRKSKAIILVTSDV 699


>At3g26050.1 68416.m03244 expressed protein
          Length = 533

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 90  PIFRKSPKRREIETTNPLGVSTQIAFVHQKSALKIVREKEVIMSEMNQRK 139
           P+   SP+ R  +T     +       H+ S++KI+  K+V+M +    K
Sbjct: 460 PMTLTSPRFRRNQTPGKENIKKPHQTPHKASSMKIINTKKVVMEKHKSSK 509


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 5   TCGFAYSCECTLRSIRPIRIRNTTLKVNEESQMNMYLLTIGTH-HFDHLMAMCPH 58
           TC    SC+C L+     + R   L ++ + ++ + L+ + T      L  +C H
Sbjct: 730 TCRIYVSCDCILQQESTYKQREVVLLLSSQEKLYVLLVGVSTDLQESSLSLLCSH 784


>At5g20110.1 68418.m02394 dynein light chain, putative similar to
           SP|O02414 Dynein light chain LC6, flagellar outer arm
           {Anthocidaris crassispina}; contains Pfam profile
           PF01221: Dynein light chain type 1
          Length = 209

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 80  MIEDMSHLEIPIFRKSPKRREIETTNPLGVSTQIAFVHQKSALKIVREKEVIMSEMNQRK 139
           +I   S  +IPI   S  ++E+E   P+  S +    HQ   ++ + E E   S  N+RK
Sbjct: 29  LINPKSKPKIPISTPSISQQEVEE-KPIVQSNKS---HQNHVMRDIFELETTCSRNNERK 84

Query: 140 K 140
           K
Sbjct: 85  K 85


>At1g37150.3 68414.m04643 holocarboxylase synthetase 2 (HCS2.d)
          identical to holocarboxylase synthetase hcs2.d
          [Arabidopsis thaliana] GI:19698373; contains
          non-consensus GG acceptor splice sites; contains Pfam
          profile PF03099: Biotin/lipoate A/B protein ligase
          family; contains TIGRfam profile TIGR00121:
          biotin--acetyl-CoA-carboxylase ligase;
          Length = 297

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/40 (22%), Positives = 21/40 (52%)

Query: 24 IRNTTLKVNEESQMNMYLLTIGTHHFDHLMAMCPHMAITH 63
          I+N     +    +++++ +I TH F   +   P+++ TH
Sbjct: 47 IKNLVRDDDSSFNLSLFMNSISTHRFGRFLIWSPYLSSTH 86


>At1g37150.2 68414.m04642 holocarboxylase synthetase 2 (HCS2.d)
          identical to holocarboxylase synthetase hcs2.d
          [Arabidopsis thaliana] GI:19698373; contains
          non-consensus GG acceptor splice sites; contains Pfam
          profile PF03099: Biotin/lipoate A/B protein ligase
          family; contains TIGRfam profile TIGR00121:
          biotin--acetyl-CoA-carboxylase ligase;
          Length = 329

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 9/40 (22%), Positives = 21/40 (52%)

Query: 24 IRNTTLKVNEESQMNMYLLTIGTHHFDHLMAMCPHMAITH 63
          I+N     +    +++++ +I TH F   +   P+++ TH
Sbjct: 47 IKNLVRDDDSSFNLSLFMNSISTHRFGRFLIWSPYLSSTH 86


>At5g47690.1 68418.m05887 expressed protein
          Length = 1638

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 102 ETTNPLGVSTQIAFVHQKSALKIVREKEVIMSEMNQ 137
           E    LG    +A V + S LK+++E  V +SE+ Q
Sbjct: 7   EQLKELGSKLDLAPVSKDSLLKLLKEAAVCLSELEQ 42


>At4g27730.1 68417.m03985 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 736

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)

Query: 13  ECTLRSIRPIR-IRNTTLKVNEESQMNMYLLTIGTHHFDHLMAMCPH-MAITHIQASPV- 69
           E  +  I P R + N   KV     M   L  I      H M + P  M +  +  + V 
Sbjct: 478 EYVIGYIYPERPVANMCFKVYGYISMTQALTFISDFKLGHYMKIPPRSMFMAQVAGTLVA 537

Query: 70  IVITTTVIWQMIEDMSHL 87
           +V+ T   W ++E++ HL
Sbjct: 538 VVVYTGTAWWLMEEIPHL 555


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,026,815
Number of Sequences: 28952
Number of extensions: 104337
Number of successful extensions: 365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 9
length of query: 145
length of database: 12,070,560
effective HSP length: 75
effective length of query: 70
effective length of database: 9,899,160
effective search space: 692941200
effective search space used: 692941200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)