Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000533-TA|BGIBMGA000533-PA|undefined
(145 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0095 - 12285976-12286037,12286111-12287229,12287494-122886... 31 0.48
02_03_0307 + 17546263-17546299,17546522-17548018,17548859-175489... 29 1.1
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 28 2.6
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 3.4
06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297... 27 7.8
>08_02_0095 -
12285976-12286037,12286111-12287229,12287494-12288604,
12288695-12288757,12288851-12288913,12289268-12289318,
12289538-12289617,12290078-12290164,12290349-12290435,
12290889-12290975,12292106-12292308,12292756-12292922
Length = 1059
Score = 30.7 bits (66), Expect = 0.48
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 97 KRREIETTNPLGVSTQIAFVHQKSALKIVREKEVI 131
K +E+ N G STQ++ + K A ++++EKE+I
Sbjct: 147 KEKELIGKNVFGESTQLSNMQDKKAEQVIKEKELI 181
>02_03_0307 +
17546263-17546299,17546522-17548018,17548859-17548949,
17549054-17549621,17550591-17550670,17550993-17551077,
17551172-17551263,17551355-17551423,17551587-17551655,
17552217-17552510,17552761-17552797,17552883-17552972,
17553520-17553585,17553704-17553818,17553902-17553940,
17554519-17554700
Length = 1136
Score = 29.5 bits (63), Expect = 1.1
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 92 FRKSPKRREIETTNPLGVSTQIAFVHQKSALKIVREKEVIMSE 134
++K+P P+ STQ+A VH ++ LK +R K + + E
Sbjct: 416 YQKAPAATSSSALVPIQNSTQLAIVHHRNHLKNLRTKVLGLDE 458
>05_06_0219 +
26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 66 ASPVIVITTTVIWQMIEDMSHLEIPIFRKSPKRREIETTNPLGVSTQIAFVHQK 119
A+ + ++ + IW +D++ ++ +FR ++ I TTN V I+ +H K
Sbjct: 2 AATLKIVLGSHIWLEDKDLAWIDGEVFRIEGQKAHIRTTNGNMVVASISDIHPK 55
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 64 IQASPVIVITTTVIWQMIEDMSHLEIPIFRKSPKRREIETTNPLGVSTQIAFVHQK 119
+QAS + ++ + +W +D + ++ +FR K + TT V ++ +H K
Sbjct: 1 MQASMLNIVIGSHVWVEDKDSAWVDGEVFRIDGKNAHVRTTKGKTVIANVSDIHPK 56
>06_01_0417 -
2972877-2973876,2973946-2974851,2975823-2976616,
2977887-2977977,2978305-2978384
Length = 956
Score = 26.6 bits (56), Expect = 7.8
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 16 LRSIRPIRIRNTTLKVNEESQMNMYLLTIGTHHF-DHLMAMCPHMAITHIQASPVIVITT 74
L+ + + IR T +K S N+ L H F H + + ++ ++ S + + T
Sbjct: 648 LKHLETLDIRATLIKKLPASAGNLSCLK---HLFAGHKVQLTRTASVKFLRQSSGLEVAT 704
Query: 75 TVIWQMIEDMSHLEIPIFRKSPKRREI 101
V+ M+ S + I + KSP REI
Sbjct: 705 GVVKNMVALQSLVHIVVKDKSPVLREI 731
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.132 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,551,645
Number of Sequences: 37544
Number of extensions: 118716
Number of successful extensions: 382
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 6
length of query: 145
length of database: 14,793,348
effective HSP length: 76
effective length of query: 69
effective length of database: 11,940,004
effective search space: 823860276
effective search space used: 823860276
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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