GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000533-TA|BGIBMGA000533-PA|undefined
         (145 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                27   4.6  
SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4)                    27   4.6  

>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 57   PHMAITHIQ-ASPVIVITTTVIWQMIEDMSHLEIPIFRKSPKRREIETTNPLGVS-TQIA 114
            PH+    +  +SP  ++ + + W     M  +   +F    KR  +E  NP G    Q+A
Sbjct: 2762 PHIGRVGLDGSSPQRIVESKLAWPNGLTMCRITRKLFWVDAKRDVVEFANPDGTGRQQLA 2821

Query: 115  FVHQKSALKI-VREKEVIMSEMNQ 137
             +H      + V E EV  ++  Q
Sbjct: 2822 LLHAPHPFGVTVYEDEVYWTDWRQ 2845


>SB_20712| Best HMM Match : DUF583 (HMM E-Value=4.4)
          Length = 369

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 11  SCECTLRSIRPIRIRNTTLKVNEESQMNMYLLTIG-THHFDHLMAMCPHMAITHIQASPV 69
           +C CT      I +  T L +   + +  +L+ +  T    HL+ M   M  TH+    +
Sbjct: 197 ACTCTCSQSWTITVAKTYLMIMTITMVTTHLVIMTITMVTTHLVIMTITMLTTHLVIMTI 256

Query: 70  IVITT-TVIWQMIEDMSHLEI 89
            ++TT  VI  +    +HL I
Sbjct: 257 TMVTTHLVIMTITMVTTHLVI 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,388,858
Number of Sequences: 59808
Number of extensions: 156007
Number of successful extensions: 416
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 5
length of query: 145
length of database: 16,821,457
effective HSP length: 76
effective length of query: 69
effective length of database: 12,276,049
effective search space: 847047381
effective search space used: 847047381
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)