GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000533-TA|BGIBMGA000533-PA|undefined
         (145 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66560-1|CAA91449.1|  214|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr...    26   9.2  
Z73970-1|CAA98244.1|  254|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical p...    26   9.2  
U64852-3|ABH03525.1|  740|Caenorhabditis elegans Uncoordinated p...    26   9.2  
U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated p...    26   9.2  
U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated p...    26   9.2  
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr...    26   9.2  
AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.     26   9.2  

>Z66560-1|CAA91449.1|  214|Caenorhabditis elegans Hypothetical
           protein D1053.1 protein.
          Length = 214

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 70  IVITTTVIWQMIEDMSHLEIPIFRKSPKRREIETTNPLGVSTQIAFVHQKSALKIVREKE 129
           ++  +  I + +E+ +H ++P+  K P +R       L V++ I  +H    L+++ +KE
Sbjct: 65  VITESLAIIEYLEE-THPDVPLLPKDPIKRAHARAISLLVASGIQPLHNLKVLQLLNKKE 123


>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical
           protein F56A8.1 protein.
          Length = 1049

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 94  KSPKRREIETTNPLGVSTQIAFVHQKSALKIVREKEVIMSEMNQRKKFEL 143
           KS +++E        V+  I  VH     KI+ E +  +S+   R+ F+L
Sbjct: 774 KSNRKKEKSNKKHFTVAEYIILVHFIIITKIINEFKFSLSQPRMRRSFQL 823


>Z73970-1|CAA98244.1|  254|Caenorhabditis elegans Hypothetical
           protein C29A12.1 protein.
          Length = 254

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 118 QKSALKIVREKEVIMSEMNQRKKFEL 143
           Q+   K++ EKE++M  + Q KK +L
Sbjct: 120 QRKHAKLLNEKEIVMRRLEQLKKEQL 145


>U88172-10|AAM97988.1|  437|Caenorhabditis elegans Hypothetical
           protein ZK354.2b protein.
          Length = 437

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 118 QKSALKIVREKEVIMSEMNQRKKFEL 143
           QKS+ K VREK+   S+ N RK  E+
Sbjct: 394 QKSSRKSVREKKAQRSQRNGRKSKEI 419


>U64852-3|ABH03525.1|  740|Caenorhabditis elegans Uncoordinated
          protein 83, isoform c protein.
          Length = 740

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 50 DHLMAMCPHMAITHIQASPVIVITTTVIWQMIEDMSHLEI 89
          DHL+     M    I+ SPV     TV    +EDMS LE+
Sbjct: 52 DHLVPETSDMRRKRIECSPVKAFYRTV---QLEDMSDLEV 88


>U64852-2|ABH03524.1|  975|Caenorhabditis elegans Uncoordinated
           protein 83, isoform b protein.
          Length = 975

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 50  DHLMAMCPHMAITHIQASPVIVITTTVIWQMIEDMSHLEI 89
           DHL+     M    I+ SPV     TV    +EDMS LE+
Sbjct: 287 DHLVPETSDMRRKRIECSPVKAFYRTV---QLEDMSDLEV 323


>U64852-1|AAB04966.2| 1041|Caenorhabditis elegans Uncoordinated
           protein 83, isoform a protein.
          Length = 1041

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 50  DHLMAMCPHMAITHIQASPVIVITTTVIWQMIEDMSHLEI 89
           DHL+     M    I+ SPV     TV    +EDMS LE+
Sbjct: 353 DHLVPETSDMRRKRIECSPVKAFYRTV---QLEDMSDLEV 389


>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical protein
            T05A7.11 protein.
          Length = 1200

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 70   IVITTTVIWQMIEDMSHLEIPIFRKSPKRRE 100
            I+  TT+IW+++     +++ IF   P R E
Sbjct: 1055 IIDITTLIWRIVPTFVKVDVIIFTTIPSRNE 1085


>AF338767-1|AAL15621.1| 1041|Caenorhabditis elegans UNC-83 protein.
          Length = 1041

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 50  DHLMAMCPHMAITHIQASPVIVITTTVIWQMIEDMSHLEI 89
           DHL+     M    I+ SPV     TV    +EDMS LE+
Sbjct: 353 DHLVPETSDMRRKRIECSPVKAFYRTV---QLEDMSDLEV 389


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,770
Number of Sequences: 27539
Number of extensions: 118123
Number of successful extensions: 292
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 9
length of query: 145
length of database: 12,573,161
effective HSP length: 75
effective length of query: 70
effective length of database: 10,507,736
effective search space: 735541520
effective search space used: 735541520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)