Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000532-TA|BGIBMGA000532-PA|IPR001487|Bromodomain
(1994 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1 ... 31 0.11
X91618-1|CAA62821.1| 524|Tribolium castaneum hunchback protein. 27 1.7
U77974-1|AAB36556.1| 276|Tribolium castaneum transcription fact... 26 3.0
EF222294-1|ABN79654.1| 451|Tribolium castaneum ecdysis triggeri... 25 5.2
EF222293-1|ABN79653.1| 434|Tribolium castaneum ecdysis triggeri... 25 5.2
EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2 p... 25 6.9
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 24 9.1
DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein. 24 9.1
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 24 9.1
>AJ223627-1|CAA11500.1| 371|Tribolium castaneum orthodenticle-1
protein protein.
Length = 371
Score = 30.7 bits (66), Expect = 0.11
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 7/101 (6%)
Query: 1580 TNQIRKQELLPSDYSAAYTTNADKHKNDTNP---NTSINYSKNTQNHQYTAYNTTRNSVQ 1636
T I+K+ P S T N H ++T+ S + S H+Y ++N T N
Sbjct: 235 TVNIKKES--PQMQSYRPTGNITPHGSNTSSLITTPSPSASPLAYQHEYNSFNWTANGHG 292
Query: 1637 RTELQQNHSSELRIPNPRGVLKNDHLNMSSSINENDITAKN 1677
N+ ++ P G ++ D+LN S +N + A N
Sbjct: 293 HNTSSHNYYAQNYAPTYYGQMQPDYLN--SQTTQNHMQAMN 331
>X91618-1|CAA62821.1| 524|Tribolium castaneum hunchback protein.
Length = 524
Score = 26.6 bits (56), Expect = 1.7
Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 1177 PQSPYSTYAQHVYASNNVTGSTTPHYFIDHTKSPLPAYNHNP--PPFYDTSKAPLVTKSA 1234
P S S QH Y S T P F P AYNHNP PP + +P K
Sbjct: 68 PSSDTSQDLQHSYQSPQ----TQPARFYSTPIVPHFAYNHNPLTPPNSEPLVSPKSEKEE 123
Query: 1235 RVHDDYTSLGP 1245
+ D T+L P
Sbjct: 124 K--DMETTLTP 132
>U77974-1|AAB36556.1| 276|Tribolium castaneum transcription factor
homolog protein.
Length = 276
Score = 25.8 bits (54), Expect = 3.0
Identities = 18/78 (23%), Positives = 25/78 (32%)
Query: 1590 PSDYSAAYTTNADKHKNDTNPNTSINYSKNTQNHQYTAYNTTRNSVQRTELQQNHSSELR 1649
P + YT + NTS S N + Y T Q L++ E
Sbjct: 36 PQSPNQQYTKDCSSPTPSDKLNTSTTSSVNVNDQNIRRYRTAFTREQLARLEKEFFKENY 95
Query: 1650 IPNPRGVLKNDHLNMSSS 1667
+ PR LN+ S
Sbjct: 96 VSRPRRCELAAQLNLPES 113
>EF222294-1|ABN79654.1| 451|Tribolium castaneum ecdysis triggering
hormone receptorisoform B protein.
Length = 451
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 1588 LLPSDYSAAYTTNADKHKNDTNPNTSINYSKNTQNHQYTAYNTTRNSVQRTELQQNHSSE 1647
++ S +S + TT + N I ++ +T N+ YT +T + N SS
Sbjct: 1 MISSKFSPSTTTTTTTTSSALNSTPLIEFNISTSNYLYTPSSTIDLYNTSSVSNFNESSS 60
Query: 1648 LRIPN 1652
PN
Sbjct: 61 SVFPN 65
>EF222293-1|ABN79653.1| 434|Tribolium castaneum ecdysis triggering
hormone receptorisoform A protein.
Length = 434
Score = 25.0 bits (52), Expect = 5.2
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 1588 LLPSDYSAAYTTNADKHKNDTNPNTSINYSKNTQNHQYTAYNTTRNSVQRTELQQNHSSE 1647
++ S +S + TT + N I ++ +T N+ YT +T + N SS
Sbjct: 1 MISSKFSPSTTTTTTTTSSALNSTPLIEFNISTSNYLYTPSSTIDLYNTSSVSNFNESSS 60
Query: 1648 LRIPN 1652
PN
Sbjct: 61 SVFPN 65
>EF117815-1|ABO38438.1| 535|Tribolium castaneum cryptochrome 2
protein.
Length = 535
Score = 24.6 bits (51), Expect = 6.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 1020 AWFKAFGAPKSTPPS 1034
AW +FG PK TP S
Sbjct: 243 AWVASFGRPKMTPQS 257
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 24.2 bits (50), Expect = 9.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 1656 VLKNDHLNMSSSINENDITA 1675
VL+ND MS+++N+N++ A
Sbjct: 149 VLRNDFRLMSNNLNKNNVVA 168
>DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein.
Length = 414
Score = 24.2 bits (50), Expect = 9.1
Identities = 31/115 (26%), Positives = 46/115 (40%), Gaps = 8/115 (6%)
Query: 1638 TELQQNHSSELRIPNPRGVLKNDHLNMSSSINENDITAKNIENHAKAQKAEKLVQNHPLV 1697
T L ++++ E P +GV ND + +S+ T+ E + N PL
Sbjct: 284 TPLVRSYAPERYPPLAQGV--ND--DAFNSVATPTPTSVMTELYPSPVPGHSTSPNLPL- 338
Query: 1698 TSNPYKPPYSSHSSIPLETIRNLPNIPQMLERYSNDERYLSTFAGGTSALYHEKQ 1752
T N PY SHS P + L NI + + N Y T SA+ + Q
Sbjct: 339 THNIAHNPYPSHSIYPSSNLMPLNNIQNLSQSGIN---YKDTNDNNVSAVTTQHQ 390
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 24.2 bits (50), Expect = 9.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 999 VETEPTTIVKPNQEKATPNL 1018
V T+ T VKP +K PNL
Sbjct: 1241 VSTDDKTEVKPTSQKIVPNL 1260
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.308 0.125 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 413,301
Number of Sequences: 317
Number of extensions: 17588
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 12
length of query: 1994
length of database: 114,650
effective HSP length: 67
effective length of query: 1927
effective length of database: 93,411
effective search space: 180002997
effective search space used: 180002997
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 50 (24.2 bits)
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