Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000532-TA|BGIBMGA000532-PA|IPR001487|Bromodomain
(1994 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 27 1.2
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 27 1.2
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 26 3.6
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 26 3.6
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 26 3.6
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 25 4.7
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 25 4.7
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 25 6.2
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 25 6.2
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 25 8.2
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 25 8.2
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 845 LSQGEKSSVSRKEVTRKRPSSREPKLVKRREIQRTIERLQPGKS 888
+S+ K ++ K++T KRP E +L+KR I + + GK+
Sbjct: 117 ISKKIKKTMENKDIT-KRPLPNESQLIKRHPIVTIMGHVDHGKT 159
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 27.5 bits (58), Expect = 1.2
Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 14/112 (12%)
Query: 1116 DSPRHQMSHTSPLLHSPASPRTEDFQKISYPIINGTVRAGFYHDTTSLKSSPEKSCSPRE 1175
D P + ++P +SPR+ED + P++ ++A +DT SL K
Sbjct: 590 DKPASSSASSAPTSVC-SSPRSEDKEVEDMPVLKRVLQAPPLYDTNSLMDEAYK------ 642
Query: 1176 GPQSPYSTYAQHVYASNNVTGSTTPHYFIDHTKSPLPAYNHNPPPFYDTSKA 1227
P + Q + P + HT+S L + +PP +S+A
Sbjct: 643 -PHKKFRALRQ------KDSAEAEPAVIVQHTQSQLHLHLTSPPARSPSSQA 687
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 25.8 bits (54), Expect = 3.6
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 1748 YHEKQFQMAQMFNKTMSAAEMHHSNSPVSLAYSQSSIPNATKDNGIYKPPILTTQADIRP 1807
Y +K Q ++ N+ E S S + + N+ K+ Y+ T++ R
Sbjct: 234 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQ--NSYKNEREYRKYRETSKGRSRD 291
Query: 1808 KTKRRRVQESKTAVVGNQTY 1827
+T+R R +E+K N Y
Sbjct: 292 RTERERSKETKIISSNNYNY 311
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 25.8 bits (54), Expect = 3.6
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 1748 YHEKQFQMAQMFNKTMSAAEMHHSNSPVSLAYSQSSIPNATKDNGIYKPPILTTQADIRP 1807
Y +K Q ++ N+ E S S + + N+ K+ Y+ T++ R
Sbjct: 245 YRKKDRQYEKLHNEKEKLLEERTSRKRYSRSREREQ--NSYKNEREYRKYRETSKGRSRD 302
Query: 1808 KTKRRRVQESKTAVVGNQTY 1827
+T+R R +E+K N Y
Sbjct: 303 RTERERSKETKIISSNNYNY 322
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 25.8 bits (54), Expect = 3.6
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 991 QTSKKDAEVETEPTTIVKPNQEKATPNLSAWFKAFGAPKSTPPSHASLKKKNEETDAEEK 1050
+ S + ++ EP + N A N + A PP+ AS + E +AE +
Sbjct: 232 ENSPLEDNIKCEPLELTGGNSGNAAGNNEDSSDSGAAASDRPPASAS----SNEHEAESE 287
Query: 1051 HESTN---SENKPLSPKHGT 1067
H ST SE K P G+
Sbjct: 288 HTSTPNFLSEAKIFPPTPGS 307
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 25.4 bits (53), Expect = 4.7
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 2/134 (1%)
Query: 855 RKEVTRKRPSSREPKLVKRREIQRTIERLQPGKSKGNLLTNIPSKVEKAEETISTGPLTK 914
RK K SRE + ++RR Q T + G + L + S + G
Sbjct: 105 RKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLHGLHGLHGLSSSAPTG-SSCGPGAAAA 163
Query: 915 ARELNKTEETSSPKLSLGSVLPTVEFTIGNDHNFGNKDEVPEEDQNNMSKPQELSSQKDD 974
A L+K S L S + + +D + G+ V E D+ ++ S DD
Sbjct: 164 AALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGS-PSVSESDEVDVIGYTSNQSDTDD 222
Query: 975 ITEETSNEKATETV 988
+ S+ + T+
Sbjct: 223 HSSVQSSSDSGVTM 236
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 25.4 bits (53), Expect = 4.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 1930 HSQVRAGYPFVGDPSSPLYQQYLQRHQEELLRQTGAQIMSLYPAGYPAGLGVRQ 1983
H+Q P G S QQ+LQ H++ ++ Q Q + P G+ RQ
Sbjct: 173 HTQHPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQSQP-GMHPRQ 225
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 25.0 bits (52), Expect = 6.2
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 1895 VAHQQRNNAEATAE--KLVKPAHQNSTHTSSSFPFIGHSQVRAGYP-FVGDPSSPLYQQY 1951
V+++Q N AT +++ A N +++P ++ + + + D P ++
Sbjct: 558 VSNEQFLNTAATLSFCEMIHNAQVNKRSIHNNYPVHTFGRLTSKHDNSLYDEYIPFLERE 617
Query: 1952 LQR-HQEELLRQTGAQIMSLYPAGYPAGLGVRQPY 1985
L++ HQE+ + IM+L G P L V +PY
Sbjct: 618 LRKAHQEKDSPRIQTYIMALGMIGEPKILSVFEPY 652
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 1041 KNEETDAEEKHESTNSENKPLSPKHGTKYDSPVGPE 1076
K+E DA E H+ + + P +PK G+K PE
Sbjct: 257 KSEPIDAYEMHQISKKKLSPATPK-GSKCSMITTPE 291
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 24.6 bits (51), Expect = 8.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 1020 AWFKAFGAPKSTPPS 1034
AW +FG PK TP S
Sbjct: 247 AWVASFGRPKMTPQS 261
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 24.6 bits (51), Expect = 8.2
Identities = 14/73 (19%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 243 TSSRVLQKIKQKEEEGKPNTHDAKQ--ESHKKDTTVLSRENRAKRRNLLRSKSVSSDTSA 300
TS + + +++E++ N + ++ E+ K+ + + R+K R ++ S S + ++
Sbjct: 272 TSRKRYSRSREREQKSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSNNYISNI 331
Query: 301 NTENNTEDMPQKV 313
+ NN + +K+
Sbjct: 332 SNYNNNNNYNKKL 344
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.308 0.125 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,855
Number of Sequences: 429
Number of extensions: 23991
Number of successful extensions: 99
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 16
length of query: 1994
length of database: 140,377
effective HSP length: 68
effective length of query: 1926
effective length of database: 111,205
effective search space: 214180830
effective search space used: 214180830
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)
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