Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000531-TA|BGIBMGA000531-PA|IPR009635|Neural
proliferation differentiation control-1
         (57 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-10
SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)                     31   0.17 
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.17 
SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.39 
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.9  
SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  

>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 24/36 (66%), Positives = 29/36 (80%)

Query: 3   DPESDEENEEGDYTVYECPGFATTGDMEVKNPLFSE 38
           D E+ +E +EGDYTVYECPG A TGDM V NP+FS+
Sbjct: 537 DDENSDEGDEGDYTVYECPGLAPTGDMTVVNPMFSD 572


>SB_18982| Best HMM Match : M (HMM E-Value=1.1e-06)
          Length = 825

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   PESDEENEEGDYTVYECPGFATTG-DMEVKNPLFSEDATPATPGKCEIVKQQP 55
           PE  +EN + D    E  G  TTG D  V + + S+  TPA P K    + QP
Sbjct: 684 PEEKQENTQSDDASIE-TGAQTTGEDKRVLDTVGSKPVTPAEPEKDTPTEDQP 735


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 4   PESDEENEEGDYTVYECPGFATTG-DMEVKNPLFSEDATPATPGKCEIVKQQP 55
           PE  +EN + D    E  G  TTG D  V + + S+  TPA P K    + QP
Sbjct: 662 PEEKQENTQSDDASIE-TGAQTTGEDKRVLDTVGSKPVTPAEPEKDTPTEDQP 713


>SB_12317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 1  MSDPESD-EENEEGDYTVYECPG 22
          MSDPESD E+++E  Y + E PG
Sbjct: 1  MSDPESDKEDSQEEPYEIIETPG 23


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 27  GDMEVKNPLFSEDATPATPGKCEIVKQQP 55
           G+M  KNP    +A+P  P K + ++ +P
Sbjct: 754 GEMTPKNPASPLNASPVVPEKLQSLEMEP 782


>SB_58982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 29  MEVKNPLFSEDATPATPGKC 48
           +EV  P F + A P  PG C
Sbjct: 695 LEVSGPYFGDPAPPCKPGPC 714


>SB_17676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1271

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/51 (31%), Positives = 21/51 (41%)

Query: 6   SDEENEEGDYTVYECPGFATTGDMEVKNPLFSEDATPATPGKCEIVKQQPK 56
           +D     GD       G A  GD++VK P  +       P + E V QQ K
Sbjct: 764 NDVTESSGDNEASSGSGAAIPGDVKVKKPKTTAAPAATIPIRPEPVVQQQK 814


>SB_44146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 9   ENEEGDYTVYECPGFATTGDMEVKNPLFSED 39
           E ++G +T YE P   TT  ++ K P   +D
Sbjct: 139 ELDKGSHTKYETPPPQTTRSLQGKTPASEQD 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.304    0.128    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,551
Number of Sequences: 59808
Number of extensions: 86147
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 8
length of query: 57
length of database: 16,821,457
effective HSP length: 37
effective length of query: 20
effective length of database: 14,608,561
effective search space: 292171220
effective search space used: 292171220
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 52 (25.0 bits)