Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000531-TA|BGIBMGA000531-PA|IPR009635|Neural
proliferation differentiation control-1
         (57 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11200.2 68416.m01359 PHD finger family protein contains Pfam...    26   2.6  
At3g11200.1 68416.m01360 PHD finger family protein contains Pfam...    26   2.6  

>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 233

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 5   ESDEENEEGDYTVYECPGFATTGDM----EVKNPLFSEDATPATPGKCEIVKQ 53
           E +EE+E GD     C G  T  +     +V    +       TP K E +KQ
Sbjct: 168 EEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQ 220


>At3g11200.1 68416.m01360 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 246

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 5   ESDEENEEGDYTVYECPGFATTGDM----EVKNPLFSEDATPATPGKCEIVKQ 53
           E +EE+E GD     C G  T  +     +V    +       TP K E +KQ
Sbjct: 181 EEEEEDEHGDTLCGSCGGHYTNEEFWICCDVCERWYHGKCVKITPAKAESIKQ 233


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.304    0.128    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,784,961
Number of Sequences: 28952
Number of extensions: 62368
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 2
length of query: 57
length of database: 12,070,560
effective HSP length: 38
effective length of query: 19
effective length of database: 10,970,384
effective search space: 208437296
effective search space used: 208437296
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 51 (24.6 bits)