GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000531-TA|BGIBMGA000531-PA|IPR009635|Neural
proliferation differentiation control-1
         (57 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   0.30 
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   1.2  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    23   3.7  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    23   3.7  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    22   8.4  

>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 0.30
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 1   MSDPESDEENEEGDYTVYE-CPGFATTGDMEVKNPLFSEDATPATP 45
           M  PE+ +    G    +E C GF  TG    K+ +FS D T  TP
Sbjct: 56  MVSPENVKTAIAGSAKDHETCRGFKKTGTTSYKDFVFSRDYTNWTP 101


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
          Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 9  ENEEGDYTVYECPGFATTGDM--EVKNPLFSEDATPATPGKCEIVKQ 53
          +N  G  T+ EC  +ATTG +    K   F  D  P   G+ E++ Q
Sbjct: 35 QNGSGKTTIIECLKYATTGILPPNTKGGAFIHD--PKICGEKEVLAQ 79


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 3   DPESDEENEEGDYTVYECP 21
           + E DEE+EEGD    E P
Sbjct: 218 EEEEDEEDEEGDEEKQEPP 236


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)

Query: 5   ESDEENEE--GDYTVYECPGFATTGDMEVKNPLFSEDATPATPGKCEIVKQQPKK 57
           E DEE E+   D    E P    +GD E  + L  +D+   T G   I  Q+P++
Sbjct: 190 EDDEEIEDVASDKDEEEKPW---SGDEEDDDELVVKDSEDETEGVSTIASQRPRR 241


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 8   EENEEGDYTVYECPGFATTGD 28
           ++ E   YT +  P +A TGD
Sbjct: 102 DDREVNGYTAHSVPVYAHTGD 122


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.128    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,229
Number of Sequences: 5004
Number of extensions: 11552
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 57
length of database: 2,362,478
effective HSP length: 38
effective length of query: 19
effective length of database: 2,172,326
effective search space: 41274194
effective search space used: 41274194
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 45 (22.2 bits)