GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000531-TA|BGIBMGA000531-PA|IPR009635|Neural
proliferation differentiation control-1
         (57 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198     26   3.4  
10_08_0645 - 19562886-19564484                                         26   4.5  
10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798           26   4.5  
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563...    26   4.5  
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374...    25   5.9  
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854           25   7.8  
02_05_0309 + 27762613-27763070,27763940-27764060,27764168-277642...    25   7.8  

>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
          Length = 683

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 5   ESDEENEEGDYTVYECPGFATTG 27
           E ++E+++ DY V+   GFA+ G
Sbjct: 292 EQEDEDDDDDYDVHSTRGFASKG 314


>10_08_0645 - 19562886-19564484
          Length = 532

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 15 YTVYECPGFATTGDMEVKNPLFSEDA 40
          Y  YE P F   G   V+NPLF + A
Sbjct: 55 YQYYEVPRFGGGGGEGVENPLFRKAA 80


>10_05_0020 - 8094412-8094653,8094692-8095017,8095632-8095798
          Length = 244

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 2   SDPESDEENEEGDYTVYECPGFATTG 27
           +D E  ++++  + T   CPG+A  G
Sbjct: 178 TDDEDQDDDDRAEATAARCPGWAAAG 203


>05_05_0285 -
           23855219-23855371,23855391-23856063,23856239-23856301,
           23856478-23856604,23856751-23856897,23856968-23856974,
           23857203-23857379
          Length = 448

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 12  EGDYTVY---ECPGFATTGDMEVKNPLFSEDATPATPGK 47
           EGD TV    +  GF T G +++   LF +  +  +PG+
Sbjct: 368 EGDLTVTCFKDVDGFLTLGVLKINKRLFDDKLSAHSPGR 406


>08_02_1553 +
           27835320-27835364,27836853-27836966,27837062-27837457,
           27837751-27837822,27837957-27838082,27838164-27838244,
           27838364-27838558,27839018-27840013
          Length = 674

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 1   MSDPESDEENEEGDYTVYECPGFATTG 27
           MS+   +EE E+G   VY     ATTG
Sbjct: 292 MSEAPQEEEEEDGVNIVYSPTNSATTG 318


>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
          Length = 751

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 3   DPESDEENEEGDYTVYECPGFAT 25
           D  SDE+N+ G Y +   PG  T
Sbjct: 87  DSSSDEDNDGGVYDIEHDPGLRT 109


>02_05_0309 +
          27762613-27763070,27763940-27764060,27764168-27764287,
          27764633-27764863,27764964-27765503
          Length = 489

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 3  DPESDEENEEGDYTVYECPGFATTGDMEVKNPLFSEDATPATPGKCEIVK 52
          D E +EE EE +   YE       G++ V +PL    A     G   +V+
Sbjct: 29 DEEVEEEEEEEEEEEYEGEEEEMEGEVPVSSPLMLPAARGGGGGGVSVVE 78


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.304    0.128    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,305
Number of Sequences: 37544
Number of extensions: 73012
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 8
length of query: 57
length of database: 14,793,348
effective HSP length: 37
effective length of query: 20
effective length of database: 13,404,220
effective search space: 268084400
effective search space used: 268084400
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 52 (25.0 bits)