Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000530-TA|BGIBMGA000530-PA|IPR009635|Neural
proliferation differentiation control-1
         (361 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   0.001
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)                    30   2.5  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.4  
SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.4  
SB_53351| Best HMM Match : Crust_neurohorm (HMM E-Value=5.5)           29   4.4  
SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.9  
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)                    29   5.9  
SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)                     29   5.9  
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  29   5.9  
SB_37683| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.8  

>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 20/44 (45%), Positives = 25/44 (56%)

Query: 318 PAYGVTGPTVDSSGDRKLAQSAHMYHYQHQKQQIIAMERYTTFT 361
           P+Y +        GD+KL  SA MYHYQ  K Q+ AME+  T T
Sbjct: 484 PSYTIVIVIFVVKGDQKLDYSAEMYHYQQTKSQLAAMEKAGTVT 527



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 293 MAILGFAFGWYTLSKRAKAAADVDYPAYGVTGPT 326
           +A+ G+   WY L   AKA ++ +Y  YG+ G T
Sbjct: 398 LALAGYC--WYKLHTTAKAVSETEYTGYGLKGST 429


>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 33.5 bits (73), Expect = 0.27
 Identities = 19/78 (24%), Positives = 31/78 (39%)

Query: 149 APHSDINSARPIVQPQSFNIPDEPKEITEKETKGFALTPFNKEYYEEQNISENTNETMPN 208
           +P  D +S     Q Q+ N    P    + E K       +K+     N  +    +  N
Sbjct: 65  SPRMDFHSKEEASQSQTVNEDKVPTTNDDDEDKASTTNDDDKDKASTTNDDDQDKASTTN 124

Query: 209 DSVEIAELEALPKLEPRQ 226
           D+ E  E+E  P +EP +
Sbjct: 125 DNEEFGEIEKNPPVEPAE 142


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/48 (29%), Positives = 23/48 (47%)

Query: 133 GGSNKAEINLKHANIPAPHSDINSARPIVQPQSFNIPDEPKEITEKET 180
           GG++K E   K    PAP       RPI  P+  ++ + P + + + T
Sbjct: 352 GGASKGEATRKPDGPPAPEDRFKGKRPIPTPRKRSVKEPPNKPSPQST 399


>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
          Length = 884

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 177 EKETKGFALTPFNKEYYEEQNISENTNE---TMPNDSVEIAELEALPKLEPRQI---RQN 230
           ++ ++GF+L+P N +   + N S N  E   + P  +V  + L++  +         RQN
Sbjct: 235 DRHSEGFSLSPRNTQASRDHNTSGNAGEKSFSSPRQTVSSSSLKSPGRARHNPTISPRQN 294

Query: 231 PNLGKAKALVAD 242
            N    K LV D
Sbjct: 295 VNFDAQKTLVMD 306


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 163 PQSFNIPDEPKEITEKETKGFALTPFNKEYYEEQNISENTNETMPNDSVEIAELEALPKL 222
           P+S N  D    + EKE+K    T    +  +  N     +ET P  ++ I + E +P  
Sbjct: 146 PESINSYDSEPGMKEKESKCVETTDTTDDGTKTMNDLSENSETTPGQTITIIK-EHMPNT 204

Query: 223 -EPRQIRQNPNLGKAKALVAD 242
            +    + +  +G++K +V +
Sbjct: 205 PQENNSKVDTTIGQSKEIVVE 225


>SB_29526| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1120

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 14/67 (20%)

Query: 125 VPKQVYSSGGSNKAEINLKHANIPAPHSDINSA-RPIVQ--------PQSFNIPDEPKEI 175
           +PKQVY  G    +E     ++IP  H D     +P V+        PQS+N+PDE  ++
Sbjct: 295 MPKQVYDHGLLTSSE-----SSIPPVHEDFRPVDKPSVEGSAFMHAFPQSYNMPDEVVQL 349

Query: 176 TEKETKG 182
             K  +G
Sbjct: 350 LGKCVEG 356


>SB_53351| Best HMM Match : Crust_neurohorm (HMM E-Value=5.5)
          Length = 308

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 165 SFNIPDEPKEITEKETKGFALTPFNKEYYEEQNISENTNETMPNDSVEIAELEALP-KLE 223
           SF + D  K  ++K ++    +   +    E  +  + N T    ++E  +  ALP +  
Sbjct: 7   SFKLSDSVKPNSKKSSRKREKSRKTRSTRNELRVEASINNTRIKSAIENGKQTALPTESN 66

Query: 224 PRQIRQNPNLGKAKALVADDLDKLKIGLYGD 254
             ++ +  ++GKA  LV    DK++   YG+
Sbjct: 67  DLRLLKFEHVGKAGPLVVYAEDKMQQNSYGN 97


>SB_7119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 14/107 (13%)

Query: 55  PKYMIPHYIKYVDKPGFLPQPI------VFTDSKPDLLTKEIIHL-------NEMETDEN 101
           P ++IP   +  D PGF+ Q        +F D +P++L + I +L        + E  ++
Sbjct: 389 PGHVIPTAPRLNDLPGFIKQTTLTSDNSMFVDMRPEVLYENIKNLVPQESPNMQSEPSQS 448

Query: 102 DEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSNKAEINLKHANIP 148
            E+ F  ++       I  V +P P+++     SN  + ++ +AN P
Sbjct: 449 TEEPFYAVLEGPVSESIHGVCNPAPQEITIQKDSNDND-DVIYANSP 494


>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
          Length = 1188

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 146 NIPAPHSDINSARPIVQPQSFNIPDEPKEITE---KETKGFALTPFNKEYYEEQNISENT 202
           N+   H  + SARP+  PQ   I D  +EI +    ET    L    KE          +
Sbjct: 201 NVTLSHESMKSARPLPHPQ-ICITDYSQEINKSVLNETSRQTLQKVEKETQASMPAQVGS 259

Query: 203 NETMPN---DSVEIAELEALPKLEPRQIRQNPNLGK 235
            E + +   + ++ A+ + LP++E + + +  + GK
Sbjct: 260 AEDVRDVIYEEIKSAQ-QQLPQMEDKSVFEETHAGK 294


>SB_39667| Best HMM Match : rve (HMM E-Value=9e-32)
          Length = 1845

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 153  DINSARPIVQPQSFNIP-DEPKEITEKETKGFALTPFNKEYYEEQNISENTNETMPND 209
            +I    P ++P+   +P  EP     + T+    TP + + Y++ N S+ TNE   +D
Sbjct: 1130 EITVPEPSLEPKKTELPASEPASTLRRSTR-LKTTPTHLKDYKKYNSSKATNEKADSD 1186


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 200 ENTNETMPNDSVEIAEL--EALPKLEPRQIRQNPNLGKAKALVADDLDKLKIGLYGDDGS 257
           E  N+ M   ++E   +   +L  LEPR  R   N G+A   V   LD  ++ +YG+D +
Sbjct: 449 EFANKEMTARNIEANNVGSSSLENLEPRDNRNERNSGRATGRVT-GLDS-ELDVYGEDSA 506

Query: 258 TNKPHHIHLLESGSSD 273
           ++       ++ G ++
Sbjct: 507 SDSGERESRMKKGGTE 522


>SB_37683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query: 196 QNISENTNETMPNDSVEIAELEALPKLEPRQIRQNPNLGKAKALVADDLDKLKIGLYGDD 255
           ++I  +  +  P+  V+  + E LP L P    +   L   ++ +AD++ +  + ++ D+
Sbjct: 44  EDIKPDEKQQQPHTPVDTTQQEDLPGLNPEAETEKNRLADYRSKMADEIGEQMLQIFTDE 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,568,821
Number of Sequences: 59808
Number of extensions: 562520
Number of successful extensions: 1194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 24
length of query: 361
length of database: 16,821,457
effective HSP length: 83
effective length of query: 278
effective length of database: 11,857,393
effective search space: 3296355254
effective search space used: 3296355254
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)