GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000530-TA|BGIBMGA000530-PA|IPR009635|Neural
proliferation differentiation control-1
         (361 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    25   0.64 
EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic hor...    24   2.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   7.9  

>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 9/101 (8%)

Query: 102 DEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSNKAEI--NLKHANIPAPHSDINSARP 159
           DE   ND +TKN++  I+E G   P+     G   K +I   L++             R 
Sbjct: 30  DEILKNDRLTKNYLDCILEKGKCTPE-----GEELKKDIPDALQNECAKCNEKHKEGVRK 84

Query: 160 IVQPQSFNIPDEPKEITEK-ETKGFALTPFNKEYYEEQNIS 199
           +++    N P   +E+ EK + KG   + +N  + EE+ ++
Sbjct: 85  VIRHLIKNKPSWWQELQEKYDPKGEYKSRYN-HFLEEEGLN 124


>EF222288-1|ABN79648.1|   73|Tribolium castaneum adipokinetic
           hormone 1 protein.
          Length = 73

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 132 SGGSNKAEINLKHANIPAPHSDINSARPIVQPQSFNIPDEPKEI 175
           SG S  ++ N    N   P   I     I+Q   FNIP+ P++I
Sbjct: 31  SGSSAGSDAN----NCKEPVETIMLIYKIIQVSFFNIPNSPQQI 70


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 325 PTVDSSGDRKLAQSAHMYHY 344
           PT +S  D K+    H Y Y
Sbjct: 377 PTAESKADIKMYADMHQYGY 396


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.131    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,999
Number of Sequences: 317
Number of extensions: 4199
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 361
length of database: 114,650
effective HSP length: 58
effective length of query: 303
effective length of database: 96,264
effective search space: 29167992
effective search space used: 29167992
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)