Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000530-TA|BGIBMGA000530-PA|IPR009635|Neural
proliferation differentiation control-1
(361 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221... 33 0.47
11_03_0140 - 10637818-10638059,10638189-10638461,10639963-106404... 32 0.62
07_03_1161 - 24434449-24434790 32 0.82
10_08_0128 - 15017499-15017909 30 2.5
05_05_0288 - 23870228-23870965,23871515-23871584,23871662-238717... 30 2.5
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 30 2.5
11_01_0133 + 1121392-1122731,1123417-1123858 30 3.3
11_02_0062 - 7909343-7909413,7909509-7910974,7911064-7912088,791... 29 4.4
02_01_0175 - 1198657-1198737,1199080-1199190,1199488-1199540,120... 29 5.8
12_01_0864 - 8205371-8205913,8206304-8206452,8206677-8206737,820... 29 7.6
10_02_0168 + 6134515-6134887,6135925-6135957,6136539-6136714 29 7.6
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 29 7.6
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 29 7.6
04_03_0619 - 18079520-18079693,18081071-18081156,18081731-18082730 29 7.6
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 29 7.6
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 29 7.6
>03_05_0211 -
22020515-22020687,22020801-22020831,22022060-22022169,
22022715-22023102,22023344-22023397,22023739-22023849,
22023956-22024015,22024618-22024694,22026155-22026188,
22026267-22027235
Length = 668
Score = 32.7 bits (71), Expect = 0.47
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 169 PDEPKEITEKETKGFALTPFNKEYYEEQNISENTNETM-PND-SVEIAELEALPKLEPRQ 226
PD+ +I EK KG + NK EEQN + N T P+D VE+AE E + + +Q
Sbjct: 18 PDKDNDIKEKAGKGNEVAVENKN-AEEQNKGGSENGTKGPSDGDVEMAEAETAKESDVKQ 76
Query: 227 I 227
+
Sbjct: 77 L 77
>11_03_0140 -
10637818-10638059,10638189-10638461,10639963-10640473,
10640556-10640768,10642717-10642784,10642893-10642958,
10644862-10644961
Length = 490
Score = 32.3 bits (70), Expect = 0.62
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 110 ITKNFMSRIMEVGSPVPKQVYSSGGSNKAEINLKHANIPAPHSDINS-ARP---IVQPQS 165
+T + SR+ E + P + + GGS+ AE +N S + A P + QP
Sbjct: 85 LTASLASRMTEPVNTTPTTLPTQGGSSAAENPSTSSNQSTGTSGASGFANPTDSVAQPPR 144
Query: 166 FNIPDEPKEITEKETKGFALTPFNKEYYE 194
DE I+EKE+ +P N+ E
Sbjct: 145 STSRDETPSISEKESSNLDSSPGNRTVQE 173
>07_03_1161 - 24434449-24434790
Length = 113
Score = 31.9 bits (69), Expect = 0.82
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 6 TVLVAAIGICAIAKSPGATTAPT---MPQTMNSGEEDKQIPS-PMNYFRNVIIPKYMIPH 61
++L+AA+ CA A A T + EED++ P+ P F + +P++ +P
Sbjct: 8 SLLLAALLACAAASGAAARRLEEEEPSSTTAPAEEEDQEEPNHPAAVFPELPVPEHELPP 67
Query: 62 YIKYVDKPGFLPQ 74
K V+ P F P+
Sbjct: 68 LPKVVELPPFFPE 80
>10_08_0128 - 15017499-15017909
Length = 136
Score = 30.3 bits (65), Expect = 2.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 1 MHAVTTVLVAAIGICAIAKSPGATTAPTMPQTMNSGEEDKQIPSP 45
M + V + + A A+ PG +T + P T + GEE+ Q+P P
Sbjct: 29 MKVLVAVDDRSTAVAATARWPGCSTTSSSPATGDGGEEE-QVPRP 72
>05_05_0288 -
23870228-23870965,23871515-23871584,23871662-23871749,
23871825-23871882,23871963-23872039,23872111-23872258
Length = 392
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 198 ISENTNETMPNDSVEIAELEALPKLEPRQIR 228
+S+ +NE + N EI E ++ +LEPRQI+
Sbjct: 195 VSQVSNECLSNAVTEIRESSSIHRLEPRQIQ 225
>03_06_0448 - 34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 30.3 bits (65), Expect = 2.5
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 125 VPKQVYSSGGSNKAEINLKHANIPAPHSDINSARPIVQPQSFN------IPDEPKEITEK 178
+PK+V + GS + + + H+++ P++ + + PDE K + EK
Sbjct: 941 MPKEVVGAEGSQQDQFTTSTHEVVDEHNEVAEVEPVLAEPNMHGQCDGEKPDEGKVLREK 1000
Query: 179 ETKGFALTPFNKEYYEEQN 197
+T+ A E E Q+
Sbjct: 1001 DTEENAKNALGVEQIERQD 1019
>11_01_0133 + 1121392-1122731,1123417-1123858
Length = 593
Score = 29.9 bits (64), Expect = 3.3
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 148 PAPHSDINSARPIVQPQSFNIPDEPKEITEKETKGFALTPFNKEYYEEQNISENTNE 204
P P D P Q Q N P PK T +ET A KE EEQ + E
Sbjct: 167 PPPQPDKRRREPQCQEQEPNQPQSPKPPTAEETAAAAAAA--KERKEEQRRKQRDEE 221
>11_02_0062 -
7909343-7909413,7909509-7910974,7911064-7912088,
7912300-7912809,7913418-7913441,7913617-7913673
Length = 1050
Score = 29.5 bits (63), Expect = 4.4
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 115 MSRIMEVGSPVPKQVYSSGGSNK-----------AEINLKHANIPAPH--SDINSARPIV 161
MSR G+ +P Q +GGSN E + +NI H S +A IV
Sbjct: 190 MSRAASTGTQIPPQTAGTGGSNTQQAAAVVEAAIGETGARASNIQVQHAPSTCEAAPSIV 249
Query: 162 QPQSFNIPDEPKEITEKET 180
+ NIP +E ET
Sbjct: 250 ETVGSNIPQPEQEPHNSET 268
>02_01_0175 -
1198657-1198737,1199080-1199190,1199488-1199540,
1200131-1200215,1200519-1200614,1200729-1200821,
1201640-1201696,1201826-1201975,1202819-1202893
Length = 266
Score = 29.1 bits (62), Expect = 5.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 39 DKQIPSPMNYFRNVIIPKYMIPHYIKYVDKPGFLPQPIVFT--DSKPDLLTKEIIHL 93
D I +P NV + Y P Y V++ F PQP V + + K +L K + HL
Sbjct: 166 DASIQTPEYRPINVFVNFYSEPEYKFKVERTNFFPQPKVNSAFNGKRKMLRKSLQHL 222
>12_01_0864 -
8205371-8205913,8206304-8206452,8206677-8206737,
8206815-8206917,8207197-8207492
Length = 383
Score = 28.7 bits (61), Expect = 7.6
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 159 PIVQPQSFNIPDEPKEITEKETKGFALTPFNKEYYEEQNISENTNETMPNDSVEIAELEA 218
P V PQ+ + P + +A P ++ +E+ I E+ ++ +VE++++E
Sbjct: 128 PDVIPQTID-SSPPHQSNSGSDIEYAPDPSIEQALDEEEIGEDVDQA----AVEVSDIER 182
Query: 219 LPKLEPRQIRQNPNLGKAKALVADDLDKLKIGLYGDD 255
P P+Q P+ DL I Y D+
Sbjct: 183 TPSTSPKQTSPTPSARTHFTRALADLFSFDIRDYLDE 219
>10_02_0168 + 6134515-6134887,6135925-6135957,6136539-6136714
Length = 193
Score = 28.7 bits (61), Expect = 7.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 1 MHAVTTVLVAAIGICAIAKSPGATTAPTMPQTMNSGEEDKQIPSPMN 47
M + + L+AA+ + A + A P +P TM + +IP +N
Sbjct: 1 MEHIRSFLLAALAVVVAAATAAAAGLPPLPSTMPADVPQPEIPPCLN 47
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 28.7 bits (61), Expect = 7.6
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 7/93 (7%)
Query: 135 SNKAEINLKHANIPAPHSDINSARPIVQPQSFNI-------PDEPKEITEKETKGFALTP 187
+ E+N +PA +++N+A IV+P N PD E+ E T A
Sbjct: 92 AESTELNAAATAVPAQPTEVNAAAEIVKPIGLNAVAAETAKPDMAMELQEPPTVTAANGR 151
Query: 188 FNKEYYEEQNISENTNETMPNDSVEIAELEALP 220
EQN+ + D +AE A P
Sbjct: 152 DVSHESFEQNLQHQVLDNALTDPSLLAESTATP 184
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 28.7 bits (61), Expect = 7.6
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 196 QNISENTNETMPNDSVEIAELEALPKLEPRQIRQNPNLGKAKALVADD 243
Q+ + TN ND+ + E++A P+ + + Q + GK K ++ ++
Sbjct: 657 QDADDGTNVPADNDAGQPTEMDAAPQQDGPENEQAADTGKKKLVITEE 704
>04_03_0619 - 18079520-18079693,18081071-18081156,18081731-18082730
Length = 419
Score = 28.7 bits (61), Expect = 7.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 243 DLDKLKIGLYGDDGSTNKPHHIHLLESGSSDPSDSIFGVA 282
D ++ K+G G DG +NK + E G + + + GVA
Sbjct: 357 DEEESKLGQAGGDGGSNKDDNGDDREDGEEEKGEDVLGVA 396
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 28.7 bits (61), Expect = 7.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 126 PKQVYSSGGSNKAEINLKHANIPAPHSDINSARPIV 161
P+Q+ GS A +N A +P+P+S N+ R +
Sbjct: 368 PRQITIDDGSPVASMNFDEAELPSPYSCENAIRAAI 403
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 28.7 bits (61), Expect = 7.6
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 3/135 (2%)
Query: 77 VFTDSKPDLLTKEIIHLNEMETDENDEKEFNDLITKNFMSRIMEVGSPVPKQVYSSGGSN 136
V D+ D + + + DE ++E D + S S S G
Sbjct: 498 VLRDTDDDAVDPHLERIKNQAGDEESDEEDEDFVADKDDSGSPTDDSGGEDSDASESGGE 557
Query: 137 KAEINLKHANIPAPHSDINSARPIVQPQSFNIPDEPKEITEKETKGFALTPFNKEYYEEQ 196
K +++ K A+ P +P + + + +PK+ + A+TPF E+
Sbjct: 558 KEKLSKKEASSSKPPV---KRKPKGRDEEGSDKRKPKKKKDPNAPKRAMTPFMYFSMAER 614
Query: 197 NISENTNETMPNDSV 211
+N N +P +
Sbjct: 615 GNMKNNNPDLPTTEI 629
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.131 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,922,930
Number of Sequences: 37544
Number of extensions: 492143
Number of successful extensions: 1075
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 17
length of query: 361
length of database: 14,793,348
effective HSP length: 83
effective length of query: 278
effective length of database: 11,677,196
effective search space: 3246260488
effective search space used: 3246260488
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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