Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000529-TA|BGIBMGA000529-PA|IPR006025|Peptidase M,
neutral zinc metallopeptidases, zinc-binding site, IPR000718|Peptidase
M13, neprilysin, IPR008753|Peptidase M13
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 32 0.26
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 29 1.8
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 29 3.2
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 4.2
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 27 7.3
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 7.3
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 27 9.7
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 27 9.7
>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 32.3 bits (70), Expect = 0.26
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 614 LVDWWQEMTKEKYLDKAKCIIDQYSNYTVK-EVGLKLNGV-NTQGENIAD----NGGIKE 667
L+DWWQ E +L K + + + + E+ + + GE I + + G
Sbjct: 217 LIDWWQSNNYESHLKKGEVAFTELAPPKLPFEINVSTTDICKICGEKIKNPAVLSTGFVF 276
Query: 668 AYYAYQAWTHRHGEEARLPGLEKYSPRQLFW 698
Y Q W RH + + LE + FW
Sbjct: 277 CYPCIQVWLQRHPFKCPVTNLELSRKGESFW 307
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 441 YFNENSKANALEMVNDIRQQFRKTLTKVDWMDDMTRQEALEKADAMASHIAYPS--EMLD 498
Y +E AN L V+ + R+T+ + ++ R+E EK D + S E L+
Sbjct: 97 YEDETETANKLSRVSSLVSVIRQTIDRKKSLERRVREEQEEKTDNEDDNDVEISTQESLE 156
Query: 499 NNRLTE 504
NN L E
Sbjct: 157 NNGLAE 162
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 28.7 bits (61), Expect = 3.2
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 377 QANYVMWRVAGASVSYLTDDLRRRQLAYITALSGKTERESRWKECADTTSASMSIAV-GA 435
Q ++ + + G V + TD R + A + + ERE+ ++E A T+ + + + G
Sbjct: 389 QRHFELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGN 448
Query: 436 LYIRKYF---NENSKANALEMV 454
++KYF NE K L +
Sbjct: 449 YVVQKYFEFGNEKQKQILLSQI 470
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 470 WMDDMTRQEALEKADAMASHIAYPSEMLDNNRLTEFYSGLEMSSEHLMESVLNLTLFTTE 529
W+ D ++ + + A PS +N E + +S E L SV NLT+F +
Sbjct: 405 WLFDPKQKHTADTLSSSAIRPRTPSPSAENYLTQENFDSDNLS-ESLDNSVENLTVFPSI 463
Query: 530 YLFGKLREPVNKTDWVTHG 548
FG+ + +T V G
Sbjct: 464 NSFGRRHSNLPQTTHVDTG 482
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 618 WQEMTKEK---YLDKAKCIIDQYSNYTVKEVGLK 648
W+E+ ++K ++DK+K + +QY + +KE G +
Sbjct: 191 WKELAEDKKKPFIDKSKALKEQYDKF-MKEAGFR 223
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 90 TASRLLLN----MDEKVDPCDNFYDFACGSFLKNTRIPDDKTSVNTFSII 135
TA RLL N + +DP Y+ S L+NT+ DDK S+ SI+
Sbjct: 773 TAIRLLSNGFSVFSKHIDPAKFIYNLVLSS-LENTKDLDDKNSILYRSIV 821
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 419 KECADTTSASMSIAVGALYIRKYFNENSKANALEMVNDIRQQFRKTLTKVDWMDDM 474
K A++T+A+ VG+ +++KY E + MV D+ + R+ + ++D++
Sbjct: 186 KAVANSTAANFIRVVGSEFVQKYLGEGPR-----MVRDVFRMARENAPAIIFIDEI 236
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 9.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 619 QEMTKEKYLDKAKCIIDQYSNYTVKEV--GLKLNGVNTQGENIADNG--GIKEAYYA 671
+ + KEKY DK K DQ + V ++ GL V T E ++ G +K +Y A
Sbjct: 306 ETVLKEKYADKVKASYDQPAFEVVSQIFRGLTGRKVTTPAEFLSHEGHAAVKCSYKA 362
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,436,826
Number of Sequences: 5004
Number of extensions: 146119
Number of successful extensions: 354
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 8
length of query: 761
length of database: 2,362,478
effective HSP length: 78
effective length of query: 683
effective length of database: 1,972,166
effective search space: 1346989378
effective search space used: 1346989378
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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