GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000529-TA|BGIBMGA000529-PA|IPR006025|Peptidase M,
neutral zinc metallopeptidases, zinc-binding site, IPR000718|Peptidase
M13, neprilysin, IPR008753|Peptidase M13
         (761 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64850.1 68418.m08158 expressed protein                             30   6.6  
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati...    29   8.7  

>At5g64850.1 68418.m08158 expressed protein
          Length = 114

 Score = 29.9 bits (64), Expect = 6.6
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 203 ENSFSWEQSVYKFRD---AGYSVDYFLDFSISVDVKNSTRRVIDLDQASLGLSREYLN 257
           EN  S   SV +F D    G S+DY +DFS   +++   +R  D  +ASLG   E +N
Sbjct: 6   ENKNSPWLSVPQFGDWDQKGGSIDYSMDFSKIREMRKLNKR--DASRASLGNEEELIN 61


>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
           similar to mitochondrial elongation factor GI:3917 from
           [Saccharomyces cerevisiae]
          Length = 754

 Score = 29.5 bits (63), Expect = 8.7
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 129 VNTFSIITDQLQEQIRSLLDEPVTPEEPRPFVLAKTLYQACMN---RTAIEARGVQPLLD 185
           + T S + D L E+   L DEPV+  E    +   T+ Q  +     +A + +GVQPLLD
Sbjct: 273 IETVSEVDDVLAEKF--LNDEPVSASELEEAIRRATIAQTFVPVFMGSAFKNKGVQPLLD 330


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,421,164
Number of Sequences: 28952
Number of extensions: 727902
Number of successful extensions: 1675
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 2
length of query: 761
length of database: 12,070,560
effective HSP length: 87
effective length of query: 674
effective length of database: 9,551,736
effective search space: 6437870064
effective search space used: 6437870064
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)