GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000528-TA|BGIBMGA000528-PA|IPR003890|Initiation factor
eIF-4 gamma, middle, IPR003891|Initiation factor eIF-4 gamma, MA3,
IPR003307|eIF4-gamma/eIF5/eIF2-epsilon
         (1417 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    29   0.23 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    29   0.23 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    29   0.23 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    27   0.91 
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    26   1.6  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    26   2.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   2.8  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   3.7  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    25   4.9  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    25   4.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    25   4.9  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    24   6.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    24   6.4  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   8.5  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 687 SKLKVPADNPTRTDECV--NFRALIINKCQNQFQTDKSNEQVMKLEKE--MTECSDPAKK 742
           S   + + NP     C+  N  +++   C N  +T+ +N+Q+ +LEKE    +    A++
Sbjct: 224 SSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNKYLTRARR 283

Query: 743 KEIQAMIQEEHRRIRM 758
            EI + +Q    ++++
Sbjct: 284 IEIASALQLNETQVKI 299



 Score = 24.6 bits (51), Expect = 4.9
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 177 MSGHNILTEICSNDNYVNDTNDRQTPQPEPTPNFAEEFNRRVYEVAKQPSDSVTKTNVTK 236
           M GH+       +DNY N T+D    Q  P P+++       Y          +   V  
Sbjct: 7   MYGHHSQHGTYPSDNYYNYTSDIPNAQQMP-PHYSNYHYEDPYGYTGSEETPPSPQEVYY 65

Query: 237 NVELPISSMSNVLSQSNAINYTNSGNNKSEIYSINESKILGP 278
           + +  I   + +++    ++YTN     S    IN      P
Sbjct: 66  HHQ-TIPQDNPIINTETGLSYTNLDYGNSNFPPINHQNYNEP 106



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 92  TRSSTHP--RYYPYVGYIPGYNTPPGHTPQYYY 122
           ++  T+P   YY Y   IP     P H   Y+Y
Sbjct: 12  SQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHY 44


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 687 SKLKVPADNPTRTDECV--NFRALIINKCQNQFQTDKSNEQVMKLEKE--MTECSDPAKK 742
           S   + + NP     C+  N  +++   C N  +T+ +N+Q+ +LEKE    +    A++
Sbjct: 13  SSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNKYLTRARR 72

Query: 743 KEIQAMIQEEHRRIRM 758
            EI + +Q    ++++
Sbjct: 73  IEIASALQLNETQVKI 88


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%)

Query: 687 SKLKVPADNPTRTDECV--NFRALIINKCQNQFQTDKSNEQVMKLEKE--MTECSDPAKK 742
           S   + + NP     C+  N  +++   C N  +T+ +N+Q+ +LEKE    +    A++
Sbjct: 13  SSSALESPNPASRSSCLGSNTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNKYLTRARR 72

Query: 743 KEIQAMIQEEHRRIRM 758
            EI + +Q    ++++
Sbjct: 73  IEIASALQLNETQVKI 88


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 protein.
          Length = 496

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 933  SKLKAVSQKGMPIKLAPHNSGWNHGSGTKNTAQAAGSSNSMISLTKNMYSILENVSTEPT 992
            +KL A+  K   +K      GWN GS T   +Q A  +    +  K+  ++++    +  
Sbjct: 84   AKLNALKVKNPNLKTLIAIGGWNEGSET--YSQVAADAAKRATFIKSALNLVQKWGFDGF 141

Query: 993  SLRGATPGNR 1002
             L    PG R
Sbjct: 142  DLDWEYPGQR 151


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 207 TPNFAEEFNRRVYEVAKQPSDSVTKTNVTKNVELPISSMSNVLSQSNAINYTNSGN 262
           T +  E F      +   PSD ++K    K     I  + +VLS  NA++    GN
Sbjct: 109 TQSLNEAFASLRKSIPTMPSDKLSKIQTLKLAARYIDFLYHVLSNENALDVDLIGN 164


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 918  DNNWKTTRTNFAVDTSKLK---AVSQKGMPIKLAPHNSGWNHGSGTKNTAQAAGSSNSMI 974
            D+  K    N  V+   LK   A+  K   +K      GWN GS   N ++ A SS+   
Sbjct: 62   DSRIKHLEPNLDVNQGNLKKFNALKLKNPNLKTLVAIGGWNEGS--VNYSKMAASSSLRA 119

Query: 975  SLTKNMYSILENVSTEPTSLRGATPGNR 1002
               K++   ++    +   L    PG R
Sbjct: 120  VFIKSVVEFVKTWGFDGFDLDWEYPGQR 147


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 260 SGNNKSEIYSINESKI--LGPDVAVETSETPILSAISDSPVIVPKMPMNVKQLQKNSDQS 317
           SG+  S I     S++  L P+  +E    P+ S    +P    K P + K  + + +  
Sbjct: 806 SGSESSSISERCSSRVESLTPERKMEPPGVPLNSTPRSTPDKREKSPTSDKAQEADGEVV 865

Query: 318 IVLDTNENIPLKQHKSKNVP-QIEDFDK 344
           +  + +E   L+ H S  +  + ED D+
Sbjct: 866 VKKEVDEEERLENHTSVKIKREAEDRDE 893


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 220 EVAKQPSDSVTKTNVTKNVELPISSMSNVLSQSNAINYTNSGNN 263
           +V  +  D  T T V  NVE+         S SN  N    GN+
Sbjct: 429 QVESEEEDEETSTTVFSNVEVVQEEAKKEESDSNNNNNKEEGNS 472


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 919 NNWKTTRTNFAVDTSKLKAVSQKGMPIKLAPHNSGWNHGSGTKNT-AQAAGSSNSMISLT 977
           ++W+ T  +   + + L ++ +K   +K+     GWN GS   +T A++A    +M+   
Sbjct: 70  DDWEITGLD---EMNHLMSLREKNPDLKIILSMGGWNEGSYKYSTVAKSAALRATMVQSV 126

Query: 978 KNMYSI 983
            N   +
Sbjct: 127 LNFTDV 132


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 177 MSGHNILTEICSNDNYVNDTNDRQTPQPEPTPNFAEEFNRRVYEVAKQPSDSVTKTNVTK 236
           M GH+       +DNY N T+D    Q  P P+++       Y          +   V  
Sbjct: 7   MYGHHSQHGTYPSDNYYNYTSDIPNAQQMP-PHYSNYHYEDPYGYTGSEETPPSPQEVYY 65

Query: 237 NVELPISSMSNVLSQSNAINYTNSGNNKSEIYSINESKILGP 278
           + +  I   + +++    ++YTN     S    IN      P
Sbjct: 66  HHQ-TIPQDNPIINTETGLSYTNLDYGNSNFPPINHQNYNEP 106



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 92  TRSSTHP--RYYPYVGYIPGYNTPPGHTPQYYY 122
           ++  T+P   YY Y   IP     P H   Y+Y
Sbjct: 12  SQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHY 44


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 2/102 (1%)

Query: 177 MSGHNILTEICSNDNYVNDTNDRQTPQPEPTPNFAEEFNRRVYEVAKQPSDSVTKTNVTK 236
           M GH+       +DNY N T+D    Q  P P+++       Y          +   V  
Sbjct: 7   MYGHHSQHGTYPSDNYYNYTSDIPNAQQMP-PHYSNYHYEDPYGYTGSEETPPSPQEVYY 65

Query: 237 NVELPISSMSNVLSQSNAINYTNSGNNKSEIYSINESKILGP 278
           + +  I   + +++    ++YTN     S    IN      P
Sbjct: 66  HHQ-TIPQDNPIINTETGLSYTNLDYGNSNFPPINHQNYNEP 106



 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 92  TRSSTHP--RYYPYVGYIPGYNTPPGHTPQYYY 122
           ++  T+P   YY Y   IP     P H   Y+Y
Sbjct: 12  SQHGTYPSDNYYNYTSDIPNAQQMPPHYSNYHY 44


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 718 QTDKSNEQVMKLEKEMTECSDPAKKKEIQAMIQEEHRRIRMRSV 761
           Q D  NE +     E ++  D  +  E QA + EE  R RM+ +
Sbjct: 93  QVDDQNESLEASVNENSKNGDDDEGHEWQADVSEEAVRARMQDL 136


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface protein
            chaoptin protein.
          Length = 782

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 1262 LQLMNTDESCECIKGWVQ 1279
            L+LM    SC+C  GWV+
Sbjct: 701  LKLMGGKWSCDCDLGWVE 718


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 361 SLLQPVSSFTNNIMGVHHNAPVQAVA 386
           S L  +S   NN +  HH AP++ VA
Sbjct: 45  SYLFSLSLAQNNQLFTHHKAPIRPVA 70


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.129    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 306,576
Number of Sequences: 317
Number of extensions: 13125
Number of successful extensions: 57
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 23
length of query: 1417
length of database: 114,650
effective HSP length: 65
effective length of query: 1352
effective length of database: 94,045
effective search space: 127148840
effective search space used: 127148840
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)