GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000528-TA|BGIBMGA000528-PA|IPR003890|Initiation factor
eIF-4 gamma, middle, IPR003891|Initiation factor eIF-4 gamma, MA3,
IPR003307|eIF4-gamma/eIF5/eIF2-epsilon
         (1417 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    27   3.5  
AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.     26   6.1  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/63 (23%), Positives = 28/63 (44%)

Query: 208  PNFAEEFNRRVYEVAKQPSDSVTKTNVTKNVELPISSMSNVLSQSNAINYTNSGNNKSEI 267
            P + E  NR +  +     DSV++T+ T       S  + +LS   +++    G   S  
Sbjct: 3250 PPYVEPLNRAIATLGDLSWDSVSQTSSTSGYRDNYSLQTGLLSPDGSLSGNAMGGRSSSQ 3309

Query: 268  YSI 270
            +S+
Sbjct: 3310 HSL 3312


>AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 704 NFRALIINKCQNQFQTDKSNEQVMK 728
           N  AL+I   QN+ +  +SNEQ++K
Sbjct: 421 NLVALLIEGLQNKLKIYRSNEQILK 445


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.313    0.129    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,324,396
Number of Sequences: 2123
Number of extensions: 53189
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 3
length of query: 1417
length of database: 516,269
effective HSP length: 73
effective length of query: 1344
effective length of database: 361,290
effective search space: 485573760
effective search space used: 485573760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)