Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000528-TA|BGIBMGA000528-PA|IPR003890|Initiation factor
eIF-4 gamma, middle, IPR003891|Initiation factor eIF-4 gamma, MA3,
IPR003307|eIF4-gamma/eIF5/eIF2-epsilon
(1417 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d... 157 5e-38
At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3 d... 121 4e-27
At5g57870.2 68418.m07239 eukaryotic translation initiation facto... 118 4e-26
At5g57870.1 68418.m07238 eukaryotic translation initiation facto... 118 4e-26
At1g62410.1 68414.m07041 MIF4G domain-containing protein similar... 68 5e-11
At4g30680.1 68417.m04349 MA3 domain-containing protein similar t... 45 4e-04
At3g48390.1 68416.m05282 MA3 domain-containing protein similar t... 44 7e-04
At4g24800.1 68417.m03552 MA3 domain-containing protein similar t... 42 0.002
At5g63190.2 68418.m07934 MA3 domain-containing protein low simil... 40 0.012
At5g63190.1 68418.m07933 MA3 domain-containing protein low simil... 40 0.012
At2g39260.1 68415.m04821 MIF4G domain-containing protein similar... 36 0.26
At1g79030.1 68414.m09215 DNAJ heat shock N-terminal domain-conta... 36 0.26
At3g16060.1 68416.m02030 kinesin motor family protein similar to... 35 0.34
At5g40450.1 68418.m04905 expressed protein 34 0.60
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family... 33 1.8
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 33 1.8
At5g06910.1 68418.m00781 DNAJ heat shock protein, putative (J6) ... 32 2.4
At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam ... 32 2.4
At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putat... 32 2.4
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 31 4.2
At5g55660.1 68418.m06940 expressed protein similar to unknown pr... 31 5.5
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 31 5.5
At1g68550.2 68414.m07832 AP2 domain-containing transcription fac... 31 5.5
At1g68550.1 68414.m07831 AP2 domain-containing transcription fac... 31 5.5
At5g57340.2 68418.m07162 expressed protein 31 7.3
At5g57340.1 68418.m07163 expressed protein 31 7.3
At5g17170.1 68418.m02012 rubredoxin family protein contains Pfam... 31 7.3
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r... 31 7.3
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 31 7.3
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 31 7.3
At5g33393.1 68418.m03983 hypothetical protein 30 9.7
At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein (... 30 9.7
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 30 9.7
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica... 30 9.7
>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
domain-containing protein similar to eukaryotic protein
synthesis initiation factor [Homo sapiens] GI:3941724;
contains Pfam profiles PF02854: MIF4G domain, PF02847:
MA3 domain
Length = 1544
Score = 157 bits (381), Expect = 5e-38
Identities = 93/272 (34%), Positives = 160/272 (58%), Gaps = 20/272 (7%)
Query: 614 ADEEEVKTQELYKKFRGILNKLTPQKFDTLLDKVKALDINNQKRLEGVIDLVFEKAIEEP 673
ADEE+ K ++L + ILNKLTPQ F+ L ++VK+++I+N L GVI +F+KA+ EP
Sbjct: 906 ADEEQAKQRQL----KSILNKLTPQNFEKLFEQVKSVNIDNAVTLSGVISQIFDKALMEP 961
Query: 674 NFSKAYAAMCHKLSKLKVPADNPTRTDECVNFRALIINKCQNQFQTDKSNEQVMKLEKEM 733
F + YA C LS +P N E + F+ L++NKCQ +F+ + K E+E
Sbjct: 962 TFCEMYADFCFHLSGA-LPDFN--ENGEKITFKRLLLNKCQEEFERGE------KEEEEA 1012
Query: 734 TECSDPAKKKEIQAMIQEEHRRIRMRSVGNVRFIGELYKLKMLAVKIMEYCMNYLIDIXX 793
+ ++ + ++ + +E+ ++R R +GN+R IGELYK +ML KIM C+ L+
Sbjct: 1013 SRVAEEGQVEQTEEEREEKRLQVRRRMLGNIRLIGELYKKRMLTEKIMHACIQKLLGYNQ 1072
Query: 794 XXXXXXXXXX---XTTIGEQIE-NEPQDHLDPIFKKMQDIVDRRSNKISSRVRFMIQDVI 849
+TIG I+ N+ + +D F+KM+ + ++ ++SSRVRFM+ + I
Sbjct: 1073 DPHEENIEALCKLMSTIGVMIDHNKAKFQMDGYFEKMKMLSCKQ--ELSSRVRFMLINAI 1130
Query: 850 ELRKRKWVTKSVIDTQPKMMDQIQKEAEQQQR 881
+LRK KW + ++ PK ++++ ++A Q+++
Sbjct: 1131 DLRKNKWQERMKVE-GPKKIEEVHRDAAQERQ 1161
Score = 35.5 bits (78), Expect = 0.26
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 1056 IDLCLIHAYY-----DEMIVEFKDVFKPENHAAVISEIFNIALDRSAKEIEMIVNIVQLL 1110
+ L I YY +E+ + KD+ P H +IS + +R KE +++ ++ L
Sbjct: 1360 LSLSAIKEYYSARDENEIGMCMKDMNSPAYHPTMISLWVTDSFERKDKERDLLAKLLVNL 1419
Query: 1111 VST--NTVSPDNLLEGMKETFDCAPDLFIDIPMLYNNLGKFVMPHIEKKHITFVQLFKL 1167
V + N ++ L++G + D D P LG+ + +K +T ++ +L
Sbjct: 1420 VKSADNALNEVQLVKGFESVLKTLEDAVNDAPKAAEFLGRIFGKSVTEKVVTLTEIGRL 1478
>At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3
domain-containing protein similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 747
Score = 121 bits (291), Expect = 4e-27
Identities = 77/262 (29%), Positives = 145/262 (55%), Gaps = 24/262 (9%)
Query: 626 KKFRGILNKLTPQKFDTLLDKVKALDINNQKRLEGVIDLVFEKAIEEPNFSKAYAAMCHK 685
K +GILNKLTP+K++ L ++ I + L+ VI L+FE AI +P F + YA +C
Sbjct: 176 KSVKGILNKLTPEKYELLKGQLIDAGITSADILKEVIQLIFENAILQPTFCEMYALLCFD 235
Query: 686 LSKL--KVPADNPTRTDECVNFRALIINKCQNQFQTDKSNEQVMKLEKEMTECSDPAKKK 743
++ P++ P + + F+ +++N CQ F E KL++E+ + ++P +
Sbjct: 236 INGQLPSFPSEEPGGKE--ITFKRVLLNNCQEAF------EGAGKLKEEIRQMTNP--DQ 285
Query: 744 EIQAMIQEEHRRIRMRSVGNVRFIGELYKLKMLAVKIMEYCMNYLID-----IXXXXXXX 798
E++ M ++ + ++R++GN+R IGEL K KM+ KI+ + + L+
Sbjct: 286 EMERM--DKEKMAKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGDDTKACPAEGDVE 343
Query: 799 XXXXXXTTIGEQIENEPQDH--LDPIFKKMQDIVDRRSNKISSRVRFMIQDVIELRKRKW 856
TIG+Q+++ P+ D F +++++ R ++ R+RFM+Q+V++LR KW
Sbjct: 344 ALCQFFITIGKQLDDSPRSRGINDTYFGRLKELA--RHPQLELRLRFMVQNVVDLRANKW 401
Query: 857 VTKSVIDTQPKMMDQIQKEAEQ 878
V + + + K +++I EAE+
Sbjct: 402 VPRRE-EVKAKKINEIHSEAER 422
Score = 46.4 bits (105), Expect = 1e-04
Identities = 28/129 (21%), Positives = 60/129 (46%)
Query: 1033 QPLNAPVPQEPISEAKKGSVKSMIDLCLIHAYYDEMIVEFKDVFKPENHAAVISEIFNIA 1092
QP AP+ + + KS+++ DE + +++ P H ++ E ++
Sbjct: 568 QPQAAPLANSLNAGELERKTKSLLEEYFSIRLVDEALQCVEELKSPSYHPELVKETISLG 627
Query: 1093 LDRSAKEIEMIVNIVQLLVSTNTVSPDNLLEGMKETFDCAPDLFIDIPMLYNNLGKFVMP 1152
L+++ +E I +++ L+S N ++ +L G D+ ID+P N+ G+F+
Sbjct: 628 LEKNPPLVEPIAKLLKHLISKNVLTSKDLGAGCLLYGSMLDDIGIDLPKAPNSFGEFLGE 687
Query: 1153 HIEKKHITF 1161
+ K + F
Sbjct: 688 LVSAKVLDF 696
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 776
Score = 118 bits (283), Expect = 4e-26
Identities = 75/267 (28%), Positives = 143/267 (53%), Gaps = 22/267 (8%)
Query: 620 KTQELYKKFRGILNKLTPQKFDTLLDKVKALDINNQKRLEGVIDLVFEKAIEEPNFSKAY 679
+ + K +GILNKLTP+K+D L ++ I + L+GVI L+F+KA+ EP F Y
Sbjct: 207 ENDRVLKTVKGILNKLTPEKYDLLKGQLIESGITSADILKGVITLIFDKAVLEPTFCPMY 266
Query: 680 AAMCHKLSKLKVPADNPTRT-DECVNFRALIINKCQNQFQTDKSNEQVMKLEKEMTECSD 738
A +C ++ ++P P D+ + F+ +++N CQ F E +L +E+ + S
Sbjct: 267 AKLCSDIND-QLPTFPPAEPGDKEITFKRVLLNICQEAF------EGASQLREELRQMSA 319
Query: 739 PAKKKEIQAMIQEEHRRIRMRSVGNVRFIGELYKLKMLAVKIMEYCMNYLIDIX-----X 793
P ++ E ++ + ++++++GN+R IGEL K KM+ KI+ + + L+
Sbjct: 320 PDQEAE----RNDKEKLLKLKTLGNIRLIGELLKQKMVPEKIVHHIVQELLGADEKVCPA 375
Query: 794 XXXXXXXXXXXTTIGEQIENEPQDHL--DPIFKKMQDIVDRRSNKISSRVRFMIQDVIEL 851
TIG+Q++ + D FK++Q + ++ ++ R+RFM+Q++I++
Sbjct: 376 EENVEAICHFFKTIGKQLDGNVKSKRINDVYFKRLQAL--SKNPQLELRLRFMVQNIIDM 433
Query: 852 RKRKWVTKSVIDTQPKMMDQIQKEAEQ 878
R WV + + + + + +I EAE+
Sbjct: 434 RSNGWVPRRE-EMKARTITEIHTEAEK 459
Score = 47.2 bits (107), Expect = 8e-05
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 1030 ENVQPLNAPVPQE---PISEAKKGSVKSMIDLCLIHAYYD-----EMIVEFKDVFKPENH 1081
++V PL PVP E P V L+ Y++ E + +++ P H
Sbjct: 587 QSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEALQCVEELGLPSYH 646
Query: 1082 AAVISEIFNIALDRSAKEIEMIVNIVQLLVSTNTVSPDNLLEGMKETFDCAPDLFIDIPM 1141
+ E +++L++S +E I +++ L+S V+P +L G D+ ID+P
Sbjct: 647 PEFVKEAISLSLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGIDLPK 706
Query: 1142 LYNNLGKFV 1150
NN G+ V
Sbjct: 707 APNNFGEIV 715
>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 780
Score = 118 bits (283), Expect = 4e-26
Identities = 75/267 (28%), Positives = 143/267 (53%), Gaps = 22/267 (8%)
Query: 620 KTQELYKKFRGILNKLTPQKFDTLLDKVKALDINNQKRLEGVIDLVFEKAIEEPNFSKAY 679
+ + K +GILNKLTP+K+D L ++ I + L+GVI L+F+KA+ EP F Y
Sbjct: 211 ENDRVLKTVKGILNKLTPEKYDLLKGQLIESGITSADILKGVITLIFDKAVLEPTFCPMY 270
Query: 680 AAMCHKLSKLKVPADNPTRT-DECVNFRALIINKCQNQFQTDKSNEQVMKLEKEMTECSD 738
A +C ++ ++P P D+ + F+ +++N CQ F E +L +E+ + S
Sbjct: 271 AKLCSDIND-QLPTFPPAEPGDKEITFKRVLLNICQEAF------EGASQLREELRQMSA 323
Query: 739 PAKKKEIQAMIQEEHRRIRMRSVGNVRFIGELYKLKMLAVKIMEYCMNYLIDIX-----X 793
P ++ E ++ + ++++++GN+R IGEL K KM+ KI+ + + L+
Sbjct: 324 PDQEAE----RNDKEKLLKLKTLGNIRLIGELLKQKMVPEKIVHHIVQELLGADEKVCPA 379
Query: 794 XXXXXXXXXXXTTIGEQIENEPQDHL--DPIFKKMQDIVDRRSNKISSRVRFMIQDVIEL 851
TIG+Q++ + D FK++Q + ++ ++ R+RFM+Q++I++
Sbjct: 380 EENVEAICHFFKTIGKQLDGNVKSKRINDVYFKRLQAL--SKNPQLELRLRFMVQNIIDM 437
Query: 852 RKRKWVTKSVIDTQPKMMDQIQKEAEQ 878
R WV + + + + + +I EAE+
Sbjct: 438 RSNGWVPRRE-EMKARTITEIHTEAEK 463
Score = 47.2 bits (107), Expect = 8e-05
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 1030 ENVQPLNAPVPQE---PISEAKKGSVKSMIDLCLIHAYYD-----EMIVEFKDVFKPENH 1081
++V PL PVP E P V L+ Y++ E + +++ P H
Sbjct: 591 QSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLEEYFNVRLLGEALQCVEELGLPSYH 650
Query: 1082 AAVISEIFNIALDRSAKEIEMIVNIVQLLVSTNTVSPDNLLEGMKETFDCAPDLFIDIPM 1141
+ E +++L++S +E I +++ L+S V+P +L G D+ ID+P
Sbjct: 651 PEFVKEAISLSLEKSPPVVEPIATLLEYLLSKKVVAPKDLETGFLLYGAMLDDIGIDLPK 710
Query: 1142 LYNNLGKFV 1150
NN G+ V
Sbjct: 711 APNNFGEIV 719
>At1g62410.1 68414.m07041 MIF4G domain-containing protein similar to
SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum};
contains Pfam profile PF02854: MIF4G domain
Length = 223
Score = 67.7 bits (158), Expect = 5e-11
Identities = 41/127 (32%), Positives = 76/127 (59%), Gaps = 16/127 (12%)
Query: 658 LEGVIDLVFEKAIEEPNFSKAYAAMCHKLSKLKVPADNPT--RTDECVNFRALIINKCQN 715
L+ + L+F+KA+ EP F YA +C + + K+P P+ +TDE ++F+ +++N CQ
Sbjct: 10 LQRLTTLIFDKAVLEPTFCPMYAQLCFDI-RHKMPRFPPSAPKTDE-ISFKRVLLNTCQK 67
Query: 716 QFQ-TDKSNEQVMKLEKEMTECSDPAKKKEIQAMIQEEHRRIRMRSVGNVRFIGELYKLK 774
F+ TD +E++ K+ A +E + ++E R + +R++GN+RF GEL+ +
Sbjct: 68 VFERTDDLSEEIRKMN---------APDQEAER--EDEVRLLNLRTLGNLRFCGELFLKR 116
Query: 775 MLAVKIM 781
ML K++
Sbjct: 117 MLTEKVV 123
>At4g30680.1 68417.m04349 MA3 domain-containing protein similar to
SP|Q03387 Eukaryotic initiation factor (iso)4F subunit
P82-34 (eIF-(iso)4F P82-34) {Triticum aestivum}; contains
Pfam profile PF02847: MA3 domain
Length = 263
Score = 44.8 bits (101), Expect = 4e-04
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 1066 DEMIVEFKDVFKPENHAAVISEIFNIALDRSAKEIEMIVNIVQLLVSTNTVSPDNLLEGM 1125
DE + +++ P H ++ E ++ L+++ +E + +++ LVS N ++P +L G
Sbjct: 122 DEALQCIEELKTPSYHPELVKEAISLGLEKNPPCVEPVAKLLEHLVSKNVLTPKDLRNGC 181
Query: 1126 KETFDCAPDLFIDIPMLYNNLGKFV 1150
D+ ID+P NN G+ +
Sbjct: 182 LLYGSMLDDIGIDLPKAPNNFGEIL 206
>At3g48390.1 68416.m05282 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 633
Score = 44.0 bits (99), Expect = 7e-04
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 11/181 (6%)
Query: 1043 PISEAKKGSVKSMIDLCLIHAYYDEMIVEFKDVFKPENHAAVISEIFNIALDRSAKEIEM 1102
P+ + K+ V S+ID + + D+ E H + + ++A+DR KE E
Sbjct: 53 PLEDYKR-EVVSIIDEYFSSGDVEVAASDLMDLGLSEYHPYFVKRLVSMAMDRGNKEKEK 111
Query: 1103 IVNIVQLLVSTNTVSPDNLLEGMKETFDCAPDLFIDIPMLYNNLGKFVMPHIEKKHITFV 1162
++ L + VSPD + G + DL +DIP N L F+ I + + V
Sbjct: 112 ASVLLSRLYAL-VVSPDQIRVGFIRLLESVGDLALDIPDAVNVLALFIARAIVDEILPPV 170
Query: 1163 QLFKLCNTIVSSNHG-HXXXXXXXXXXXXSMGPKFVKSKW--------QESNLKLEQWMN 1213
L + T+ S+ G + V++KW +E+ K+ +++N
Sbjct: 171 FLARAKKTLPHSSQGFQVILVSENSYLSAPHHAELVETKWGGSTHITVEETKRKISEFLN 230
Query: 1214 E 1214
E
Sbjct: 231 E 231
Score = 34.7 bits (76), Expect = 0.45
Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 1067 EMIVEFKDVFKPENHAAVISEIFNIALDRSAKEIEMIVNIVQLLVSTNTVSPDNLLEGMK 1126
E+I +D+ PE + + ++ +A+DR KE EM ++ + S ++ + G
Sbjct: 371 ELIRSLEDLGLPEYNPVFLKKLITLAMDRKNKEKEM-ASVFLASLHMEMFSTEDFINGFI 429
Query: 1127 ETFDCAPDLFIDIPMLYNNLGKFVMPHIEKKHITFVQLFKLCNTIVSSNHG 1177
+ A D +DI + L F+ + + + L ++ N++ + G
Sbjct: 430 MLLESAEDTALDILAASDELALFLARAVIDDVLAPLNLEEISNSLPPKSTG 480
>At4g24800.1 68417.m03552 MA3 domain-containing protein similar to
programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 702
Score = 42.3 bits (95), Expect = 0.002
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 1042 EPISEAKKGSVKSMIDLCLIHAYYDEMIVEFKDVFKPENHAAVISEIFNIALDRSAKEIE 1101
+P+ + KK + S+I+ D + ++ E H I + ++A+DR KE E
Sbjct: 112 DPLDDYKKAAA-SIINEYFSTGDVDVAAADLIELGSSEYHPYFIKRLVSVAMDRHDKEKE 170
Query: 1102 MIVNIVQLLVSTNTVSPDNLLEGMKETFDCAPDLFIDIPMLYNNLGKFV 1150
M ++ L + + ++P+ + +G + A D +DIP N L F+
Sbjct: 171 MASVLLSALYA-DVINPNQIRDGFVLLLESADDFVVDIPDAVNVLALFL 218
Score = 34.7 bits (76), Expect = 0.45
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 1060 LIHAYYD-----EMIVEFKDVFKPENHAAVISEIFNIALDRSAKEIEMIVNIVQLLVSTN 1114
+IH Y++ E+I +D+ PE + + ++ +ALDR E EM +++ +
Sbjct: 422 IIHEYFNSDDIPELIRSLEDLGAPEYNPIFLKKLITLALDRKNHEKEM-ASVLLSSLHIE 480
Query: 1115 TVSPDNLLEGMKETFDCAPDLFIDIPMLYNNLGKFV 1150
+ +++ +G + A D +DI N L F+
Sbjct: 481 MFTTEDVADGFVMLLESAEDTALDILDASNELALFL 516
>At5g63190.2 68418.m07934 MA3 domain-containing protein low similarity
to programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 702
Score = 39.9 bits (89), Expect = 0.012
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 1035 LNAPVPQEPISEAKKGSVKSMIDLCLIHAYYDEMIVEFKDVFKPENHAAVISEIFNIALD 1094
+++PV +P+++ KK SV S+ID + +++ E H + ++A+D
Sbjct: 112 VDSPV-SDPLNDYKK-SVVSIIDEYFSTGDVKVAASDLRELGSSEYHPYFTKRLVSMAMD 169
Query: 1095 RSAKEIEMIVNIVQLLVSTNTVSPDNLLEGMKETFDCAPDLFIDIPMLYNNLGKFV 1150
R KE EM ++ L + + + PD + +G DL +DI N L F+
Sbjct: 170 RHDKEKEMASVLLSALYA-DVILPDQIRDGFIRLLRSVDDLAVDILDAVNVLALFI 224
Score = 35.5 bits (78), Expect = 0.26
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 1067 EMIVEFKDVFKPENHAAVISEIFNIALDRSAKEIEMIVNIVQLLVSTNTVSPDNLLEGMK 1126
E+I +D+ PE + + + +ALDR +E EM +++ + S ++ + G
Sbjct: 440 ELIRSLQDLGAPEYNPVFLKRLITLALDRKNREKEM-ASVLLSALHMELFSTEDFINGFI 498
Query: 1127 ETFDCAPDLFIDIPMLYNNLGKFV 1150
+ A D +DI N L F+
Sbjct: 499 MLLESAEDTALDIMDASNELALFL 522
>At5g63190.1 68418.m07933 MA3 domain-containing protein low similarity
to programmed cell death 4 protein [Gallus gallus]
GI:12958564; contains Pfam profile PF02847: MA3 domain
Length = 702
Score = 39.9 bits (89), Expect = 0.012
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 1035 LNAPVPQEPISEAKKGSVKSMIDLCLIHAYYDEMIVEFKDVFKPENHAAVISEIFNIALD 1094
+++PV +P+++ KK SV S+ID + +++ E H + ++A+D
Sbjct: 112 VDSPV-SDPLNDYKK-SVVSIIDEYFSTGDVKVAASDLRELGSSEYHPYFTKRLVSMAMD 169
Query: 1095 RSAKEIEMIVNIVQLLVSTNTVSPDNLLEGMKETFDCAPDLFIDIPMLYNNLGKFV 1150
R KE EM ++ L + + + PD + +G DL +DI N L F+
Sbjct: 170 RHDKEKEMASVLLSALYA-DVILPDQIRDGFIRLLRSVDDLAVDILDAVNVLALFI 224
Score = 35.5 bits (78), Expect = 0.26
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 1067 EMIVEFKDVFKPENHAAVISEIFNIALDRSAKEIEMIVNIVQLLVSTNTVSPDNLLEGMK 1126
E+I +D+ PE + + + +ALDR +E EM +++ + S ++ + G
Sbjct: 440 ELIRSLQDLGAPEYNPVFLKRLITLALDRKNREKEM-ASVLLSALHMELFSTEDFINGFI 498
Query: 1127 ETFDCAPDLFIDIPMLYNNLGKFV 1150
+ A D +DI N L F+
Sbjct: 499 MLLESAEDTALDIMDASNELALFL 522
>At2g39260.1 68415.m04821 MIF4G domain-containing protein similar to
hUPF2 [Homo sapiens] GI:12232320; contains Pfam profile
PF02854: MIF4G domain
Length = 1186
Score = 35.5 bits (78), Expect = 0.26
Identities = 61/289 (21%), Positives = 113/289 (39%), Gaps = 22/289 (7%)
Query: 592 DDVKLNESDSAWRPTRYVRAENADEEEVKTQELY--KKFRGILNKLTPQKFDTLLDKVKA 649
+D +DSA R + ++EEV+ ++ KK +G K + +K + +K K+
Sbjct: 403 EDTTEVSADSASMDDRSNAEQPKEKEEVEKEKAKDTKKEKG-KEKDSEKKMEHEKEKGKS 461
Query: 650 LDINNQKRL-EGVIDLVFEKAIEEPNFSKAYAAMCHKLSKLKVPADNPTRTD-ECVNFRA 707
LD+ N +RL + + V I++ Y KL N RT E + + +
Sbjct: 462 LDVANFERLLQRLPGCVSRDLIDQLTVEYCYLNSKTNRKKLVKALFNVPRTSLELLAYYS 521
Query: 708 LIINKCQNQFQTDKSNEQVMKLEKEMTECSDPAKKKEIQAMIQEEHRRIRMRSVGNVRFI 767
++ + + D + V LE E + I+ I+ N+RFI
Sbjct: 522 RMVATLASCMK-DIPSMLVQMLEDEFNSLVHKKDQMNIETKIR------------NIRFI 568
Query: 768 GELYKLKMLAVKIMEYCMNYLIDIXXXXXXXXXXXXXTTIGEQIENEPQDHLDPIFKKMQ 827
GEL K K++ ++ C+ +D T G + P+ L M
Sbjct: 569 GELCKFKIVPAGLVFSCLKACLDEFTHHNIDVACNLLETCGRFLYRSPETTLR--MTNML 626
Query: 828 DIVDRRSN--KISSRVRFMIQDVIELRKRKWVTKSVIDTQPKMMDQIQK 874
DI+ R N + R ++++ L K + + +P + ++K
Sbjct: 627 DILMRLKNVKNLDPRQSTLVENAYYLCKPPERSARISKVRPPLHQYVRK 675
>At1g79030.1 68414.m09215 DNAJ heat shock N-terminal
domain-containing protein / S-locus protein, putative
similar to S-locus protein 5 (GI:6069485) [Brassica
rapa]; contains Pfam profile PF00226 DnaJ domain
Length = 416
Score = 35.5 bits (78), Expect = 0.26
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 414 CPSYLNTPQNQIIRETKERLKSEEQER-IEYDTTNLEKETSFTTIRSNGPASLVISSVDS 472
C + PQ++ ++ KE + E+ R EY + +E ET T I N +S ++ +
Sbjct: 142 CDNLSEKPQHEEPKKPKETIIEEDYSREFEYPSVPVEDETE-TKIHEN-KSSAKPTAPST 199
Query: 473 LSNTTNPPTSQKIISEESTKNIEIVNKIIN 502
+ NT +S KI+ E + + + + +I+N
Sbjct: 200 VVNTVKEISSVKIVKIEESSSADEMKRILN 229
>At3g16060.1 68416.m02030 kinesin motor family protein similar to
kinesin heavy chain member 2 GB:NP_032468 from [Mus
musculus]; contains Pfam profile PF00225: Kinesin motor
domain
Length = 684
Score = 35.1 bits (77), Expect = 0.34
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 239 ELPISSMSNVLSQSNAINYTNSGNNKSEIYSINESKILGPDVAVETSETPILSAISDSPV 298
E+P+S+ + S N + + ++ N S++L ++A E ++A++ V
Sbjct: 116 EIPVSNQLDGPSLFNPSQGQSFDDFEAYNKQPNRSRVLAENLAAEKER---MNAVAKIKV 172
Query: 299 IVPKMPMNVKQLQKNSDQSIVLDTNENIPLKQHKSK 334
+V K P+N K+ KN + ++DT+ N L H++K
Sbjct: 173 VVRKRPLNKKESTKNEED--IVDTHANC-LTVHETK 205
>At5g40450.1 68418.m04905 expressed protein
Length = 2910
Score = 34.3 bits (75), Expect = 0.60
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 14/150 (9%)
Query: 196 TNDRQTPQPEPTPNFAEEFNRRVYEVAKQPSDSVTKTNVTKNV-ELPISSMSNVLSQSNA 254
T+D + EP + E R ++A+ S+ + ++V E+ I S++ L +
Sbjct: 1686 TDDEKVKDAEPIGDMRE----RGLDIAETTHLSLPSVDQKEDVDEIHIPSVALPLDEQEK 1741
Query: 255 INYTNSGNNKSEIYSINESKILGPDVAVETSETPILSAISDSPVIVPKMPMNVKQLQKNS 314
+ T G KS +E++ PD V++S +P+LS +D+ K +V Q+ S
Sbjct: 1742 VTSTEKGETKS-----SEAEDDKPDEHVDSSTSPMLSEKNDNETQTSKTSEDVCMQQEES 1796
Query: 315 DQSIVLDTNENIPLKQHKSKNVPQ-IEDFD 343
V E+ K+ KS+ + + IE+ +
Sbjct: 1797 GTLEVPKPEES---KEDKSQEISETIEEIE 1823
>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 300
Score = 32.7 bits (71), Expect = 1.8
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 92 TRSSTHPRYYPYVGYIPGYNTPPGHTPQYYYTPNSPQLPSQNAQSNPPS 140
T+ T+P P +GY PGY+ PP P Y PN+P AQ+ P S
Sbjct: 42 TQQQTYP---PVMGY-PGYHQPPPPYPNY---PNAPYQQYPYAQAPPAS 83
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 32.7 bits (71), Expect = 1.8
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 98 PRYYPYVGYIPGYNTPPGHTPQYYYTPNSP-QLPSQNAQSNPPSRNN 143
P YYP V P PP TP Y+ P SP Q P QS PP N
Sbjct: 738 PVYYPPVTQSP----PPPSTPVEYHPPASPNQSPPPEYQSPPPKGCN 780
>At5g06910.1 68418.m00781 DNAJ heat shock protein, putative (J6)
identical to DnaJ homologue [Arabidopsis thaliana]
GI:2689720; contains Pfam profile PF00226 DnaJ domain
Length = 284
Score = 32.3 bits (70), Expect = 2.4
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 595 KLNESDSAWRPTRYVRAENADEEEVKTQELYKKFRGILNKLTPQKFDTLLDKVKALDINN 654
K+NE+D Y ++ E+ EL+ KF+G +N+L F ++L LD
Sbjct: 119 KVNEADIEEFEANY---RGSESEKKDLLELFNKFKGKMNRL----FCSMLCSDPKLD--- 168
Query: 655 QKRLEGVIDLVFEKAIEEPNFSKAYAAMCHKLSKLKVPADNPTR 698
R + ++D A E SKAY +K+S+ K P +P R
Sbjct: 169 SHRFKDMLDEAI--AAGEVKSSKAYEKWANKISETK-PPTSPLR 209
>At2g39340.1 68415.m04829 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1006
Score = 32.3 bits (70), Expect = 2.4
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 178 SGHNILTEICSNDNYVNDTNDRQTPQPEPTPNFAEEFNRRVYEVAKQPSDSVTKTNVTKN 237
+GH++ + N NY N P T N V E+ S +++ T+ T N
Sbjct: 46 TGHSVENQAVENGNYSNSNYYHPQPTGPATGN--------VQEIPNTVSFTISSTSGTAN 97
Query: 238 VELPISSMSNVLSQSNAINYTNSG 261
V S + + S+ NY+N+G
Sbjct: 98 VAQDYSGYTPYQTSSDPHNYSNTG 121
>At1g22020.1 68414.m02755 glycine hydroxymethyltransferase, putative
/ serine hydroxymethyltransferase, putative /
serine/threonine aldolase, putative similar to serine
hydroxymethyltransferase [Chlamydomonas reinhardtii]
GI:17066746; contains Pfam profile PF00464: serine
hydroxymethyltransferase
Length = 599
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 842 RFMIQDVIELRK---RKWVTKSVIDTQPKMMDQIQKEAEQQQRHIELM 886
RF++ IE R+ R W +S+ + P++ + ++KE ++Q R IEL+
Sbjct: 120 RFVVDSGIESRRAVVRAWGNQSIEEADPEIHEFMEKEKQRQFRGIELI 167
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family protein
similar to HMG2B [Homo sapiens] GI:32335; contains Pfam
profile PF00505: HMG (high mobility group) box
Length = 456
Score = 31.5 bits (68), Expect = 4.2
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 1198 KSKWQESNLKLEQWMNEDQSLTRSYEQVSKWIEDNHFEFLEGDVKSSEEENKKILSPSQT 1257
KS + + + E+W N YE+V+K ++ + + +E ++ EEE LS +
Sbjct: 278 KSVVEVAKITGEEWKNLSDKKKAPYEKVAKKNKETYLQAMEEYKRTKEEE---ALSQKKE 334
Query: 1258 QDKLLQLMNTDESCECIK 1275
+++LL+L + E+ + +K
Sbjct: 335 EEELLKL-HKQEALQMLK 351
>At5g55660.1 68418.m06940 expressed protein similar to unknown protein
(pir||T08929)
Length = 778
Score = 31.1 bits (67), Expect = 5.5
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1216 QSLTRSYEQVSKWIEDNHFEFLEGDVKSSEEENKKILSPSQTQDKLLQLMNTDESCE 1272
+S+ S ++ + ED+ E E +V+ EEEN+ + P +++D+ QL ++E+ E
Sbjct: 520 KSVAHSDDESEEEKEDDEEEEKEQEVEEEEEENENGI-PDKSEDEAPQLSESEENVE 575
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 31.1 bits (67), Expect = 5.5
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 1237 LEGDVKSSEEENKKILSPS-QTQDKLLQLMNTDESCECIKGWVQDKFGKSSNE 1288
L +K++EEENK I S + +T +KL Q NT + G ++D + +E
Sbjct: 173 LSASLKAAEEENKAISSKNVETMNKLEQTQNTIQELMAELGKLKDSHREKESE 225
Score = 30.3 bits (65), Expect = 9.7
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 1240 DVKSSEEENKKILSPS-QTQDKLLQLMNTDESCECIKGWVQDKFGKSSNE 1288
D+K +EEENK I S + + DKL Q NT + G ++D+ + +E
Sbjct: 352 DLKDAEEENKAISSKNLEIMDKLEQAQNTIKELMDELGELKDRHKEKESE 401
>At1g68550.2 68414.m07832 AP2 domain-containing transcription
factor, putative contains Pfam profile: PF00847 AP2
domain
Length = 324
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/63 (22%), Positives = 33/63 (52%)
Query: 182 ILTEICSNDNYVNDTNDRQTPQPEPTPNFAEEFNRRVYEVAKQPSDSVTKTNVTKNVELP 241
I+ + + D+ +D + + P+P E N EV++QPS+S ++ + + ++
Sbjct: 42 IVNDPYATDDSSSDEEELKVPKPRKMKRIVREINFPSMEVSEQPSESSSQDSTKTDGKIA 101
Query: 242 ISS 244
+S+
Sbjct: 102 VSA 104
>At1g68550.1 68414.m07831 AP2 domain-containing transcription
factor, putative contains Pfam profile: PF00847 AP2
domain
Length = 324
Score = 31.1 bits (67), Expect = 5.5
Identities = 14/63 (22%), Positives = 33/63 (52%)
Query: 182 ILTEICSNDNYVNDTNDRQTPQPEPTPNFAEEFNRRVYEVAKQPSDSVTKTNVTKNVELP 241
I+ + + D+ +D + + P+P E N EV++QPS+S ++ + + ++
Sbjct: 42 IVNDPYATDDSSSDEEELKVPKPRKMKRIVREINFPSMEVSEQPSESSSQDSTKTDGKIA 101
Query: 242 ISS 244
+S+
Sbjct: 102 VSA 104
>At5g57340.2 68418.m07162 expressed protein
Length = 256
Score = 30.7 bits (66), Expect = 7.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 226 SDSVTKTNVTKNVELPISSMSNVLSQSNAINYTNSGNNKSEIYSINESKILGPDVAVETS 285
S S T T N ++ SS +++ S S+ N N NN S N + GP+ + +S
Sbjct: 173 SSSSTTMTTTTNKDMDYSSTTSMRSSSD--NCNNQSNNNLYNNSNNNQESSGPNTPMSSS 230
Query: 286 ETPILSAISDSP 297
T L P
Sbjct: 231 STTSLDREKKRP 242
>At5g57340.1 68418.m07163 expressed protein
Length = 238
Score = 30.7 bits (66), Expect = 7.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 226 SDSVTKTNVTKNVELPISSMSNVLSQSNAINYTNSGNNKSEIYSINESKILGPDVAVETS 285
S S T T N ++ SS +++ S S+ N N NN S N + GP+ + +S
Sbjct: 155 SSSSTTMTTTTNKDMDYSSTTSMRSSSD--NCNNQSNNNLYNNSNNNQESSGPNTPMSSS 212
Query: 286 ETPILSAISDSP 297
T L P
Sbjct: 213 STTSLDREKKRP 224
>At5g17170.1 68418.m02012 rubredoxin family protein contains Pfam
profile PF00301: Rubredoxin
Length = 271
Score = 30.7 bits (66), Expect = 7.3
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 226 SDSVTKTNVTKNVELPISSMSNVLSQS---NAINYTNSGNNKSEIYSINESKILG 277
S TKT T N + S +++LSQ ++ +S + SEI++++E KI G
Sbjct: 13 SSFFTKTTTTSNPSPKLHSSASLLSQKTVFQGVSLEDSKKSVSEIFAVSERKIGG 67
>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
cerevisiae,PID:g555939
Length = 724
Score = 30.7 bits (66), Expect = 7.3
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 1042 EPIS-EA-KKGSVKSMIDLCLIHAYYDE-MIVEFKDVFKPENHAAVISEI-FNIALDRSA 1097
EP+S EA KK SV + D C + Y + M V+ + + +S I + LD +
Sbjct: 225 EPLSSEAMKKVSVNKIGD-CETNGYQENRMEVQARPSLSTQQEITPVSTIEIDDNLDVTE 283
Query: 1098 KEIEMIVNIVQLLVSTNTVSPDNLLEGMKET 1128
K IE N+V +T+ +SPD LL + T
Sbjct: 284 KPIEAEENLVAEPTATDDLSPDELLSTSEAT 314
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 91 TTRSSTHPRYYPYVGYIPGYNTPP---GHTPQYYYTPNSPQLPSQNAQSNPPS 140
+T S T + P + P +TPP G P + TP+ P PS S+PPS
Sbjct: 83 STPSHTPTPHTP--SHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPS 133
Score = 30.3 bits (65), Expect = 9.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 111 NTPPGHTPQYYYTPNSPQLPSQNAQSNPPSRNNPTT 146
+TP HTP + TP++P + S+P + ++P+T
Sbjct: 87 HTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPST 122
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 30.7 bits (66), Expect = 7.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 91 TTRSSTHPRYYPYVGYIPGYNTPP---GHTPQYYYTPNSPQLPSQNAQSNPPS 140
+T S T + P + P +TPP G P + TP+ P PS S+PPS
Sbjct: 83 STPSHTPTPHTP--SHTPTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPS 133
Score = 30.3 bits (65), Expect = 9.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 111 NTPPGHTPQYYYTPNSPQLPSQNAQSNPPSRNNPTT 146
+TP HTP + TP++P + S+P + ++P+T
Sbjct: 87 HTPTPHTPSHTPTPHTPPCNCGSPPSHPSTPSHPST 122
>At5g33393.1 68418.m03983 hypothetical protein
Length = 435
Score = 30.3 bits (65), Expect = 9.7
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 418 LNTPQNQ-IIRETKERLKSEEQ-ERIEYDTTNLEKETSFTTIRSNG 461
L TP NQ I+E +E K EE+ +++E + LE+E F + NG
Sbjct: 92 LRTPINQQAIKEEEETKKLEEETKKLEVEKKTLEEEKKFDLMFCNG 137
>At3g48190.1 68416.m05257 ataxia-telangiectasia mutated protein
(Atm) identical to ataxia-telangiectasia mutated protein
(Atm) [Arabidopsis thaliana] GI:7529272; contains Pfam
profile PF00855: PWWP domain; contains GA donor splice
site at exon 73
Length = 3255
Score = 30.3 bits (65), Expect = 9.7
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 387 PVMSILTPVTVPAHSQTIVTPTNTQG-MCPSYLNTPQNQIIRETKERLKSE-----EQER 440
PV+S ++PV P + T + M + L + + RETK +LKSE E++
Sbjct: 779 PVISHVSPVPKPNNIPTSMDAMRQNLLMMTAMLEKSGDSLSRETKAKLKSEITGLLEKDG 838
Query: 441 IEYDTTNLEKETSFTTIR--SNGPASLVISSVDSLSNTTNPPTSQKII 486
++ T LE E S T R S A L +D + N P K++
Sbjct: 839 VKLLNTWLEGERSITFCRFLSQNTAKL---KLDEIPNAETWPFLVKLL 883
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 30.3 bits (65), Expect = 9.7
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 98 PRYYPYVGYIPGYNTPPGHTPQYYYTPNSPQLPSQNAQSNPPSRNNPT 145
P Y Y P Y PP +P Y Y P P P +PP + PT
Sbjct: 420 PPPYVYPPPPPPYVYPPPPSPPYVYPPPPPS-PQPYMYPSPPCNDLPT 466
>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q61687
Transcriptional regulator ATRX {Mus musculus}; contains
PFam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 816
Score = 30.3 bits (65), Expect = 9.7
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 1197 VKSKWQESNLK-LEQWMNEDQSLTRSYEQVSKWIEDNHFEFLEGDVK 1242
VK++ ++ LK L QW+ E L Y+Q ++ I D++FE D K
Sbjct: 350 VKAESRKQQLKVLGQWIKERSILFLGYQQFTRIICDDNFEAASEDCK 396
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.129 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,922,231
Number of Sequences: 28952
Number of extensions: 1280208
Number of successful extensions: 3652
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 3589
Number of HSP's gapped (non-prelim): 73
length of query: 1417
length of database: 12,070,560
effective HSP length: 90
effective length of query: 1327
effective length of database: 9,464,880
effective search space: 12559895760
effective search space used: 12559895760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 65 (30.3 bits)
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