Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000527-TA|BGIBMGA000527-PA|IPR005828|General substrate
transporter
         (285 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)                    55   8e-08
SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)                  36   0.029
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)                 36   0.050
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)                  33   0.35 
SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)                 31   0.82 
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)                     31   1.4  
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.4  
SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)                30   2.5  
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)                 29   3.3  
SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_45969| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.11)                 29   4.4  
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)                   29   4.4  
SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)              29   5.8  
SB_39928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_36076| Best HMM Match : Ins134_P3_kin (HMM E-Value=0.00031)         28   7.6  
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)                   28   7.6  
SB_9941| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 512

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 24/77 (31%), Positives = 42/77 (54%)

Query: 169 VFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTLYIWGTYGFYGIVSLMGCTVLYFIL 228
           +F  + R   + +++   +   F   K ++++ D + I GTY FYG +S +G   +   +
Sbjct: 424 IFPLQARGIASSISTLCNWSLAFAVTKTFVNIEDAITIQGTYWFYGGLSFLGFLFVLMFV 483

Query: 229 PETEGKKLNEIENHFTG 245
           PET+GK L +IE  F G
Sbjct: 484 PETKGKTLEQIERLFDG 500



 Score = 33.5 bits (73), Expect = 0.20
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 41  PILAVIALCFVPESPHWLVAKKRYEDA 67
           P L V+ + FVPE+P W ++ KR  DA
Sbjct: 210 PALLVVLMFFVPETPRWSLSHKRRRDA 236


>SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)
          Length = 124

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 15/71 (21%), Positives = 37/71 (52%)

Query: 169 VFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTLYIWGTYGFYGIVSLMGCTVLYFIL 228
           +F +  +     LA+ + +      +  ++ ++ ++   GT+ FYG++ ++    +Y  +
Sbjct: 9   IFPSGIKGRAFSLATVLNWGTNVFVSFTFLDLLGSIGTSGTFFFYGLICVIAIVFIYKYV 68

Query: 229 PETEGKKLNEI 239
           PET+ K L +I
Sbjct: 69  PETKNKTLEQI 79


>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
          Length = 456

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 14/28 (50%), Positives = 20/28 (71%)

Query: 43  LAVIALCFVPESPHWLVAKKRYEDARKT 70
           L V+ + F+PE+  WL+AKK+   ARKT
Sbjct: 208 LLVVLMAFMPETARWLIAKKKETRARKT 235


>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
          Length = 201

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 196 MYISMVDTLYIWGTYGFYGIVSLMGCTVLYFILPETEGKKLNEIENHFTGIRKLTNQVYR 255
           ++ ++   LY +    F  +V++   T  +F +PET+G+ + +I +HF G       +YR
Sbjct: 132 VFTAIAVALYPYTFIVFMALVAIFW-TFTFFFVPETKGRTIEDITDHFRG-GDSRCVMYR 189

Query: 256 SKRRPQNEVS 265
             R  + EV+
Sbjct: 190 GLRGHRQEVN 199


>SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)
          Length = 839

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 11/133 (8%)

Query: 103 CVLLVHYTGKR-PLAFFSTGVAGICCILVAIYDLYARTHIMSGVSLNAERVVTDVNATLT 161
           C  L+   G+R P A F   + G  C+LV  +    +THI +  +L     V+  N  +T
Sbjct: 369 CWFLIGRYGRRVPYAAFEI-IGGTACMLVLAFP---KTHIAAITTLAMIGKVSVSNNFMT 424

Query: 162 SETEVFVVFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTLYIWGTYG--FYGIVSL- 218
           S      ++    R+ G G+AS +  + G +    ++ M +   +  T     +G++ L 
Sbjct: 425 SYVFTVELYPTIIRNIGLGVASTMARVGGIVA-PYFVLMGELPDVDNTVPMVIFGVLGLA 483

Query: 219 MGCTVLYFILPET 231
            G  VL+  LPET
Sbjct: 484 AGVAVLF--LPET 494



 Score = 29.5 bits (63), Expect = 3.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 51  VPESPHWLVAKKRYEDARK 69
           +PE+P WL+A+ R ++A K
Sbjct: 252 IPETPRWLIAQNRLDEAHK 270


>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
          Length = 493

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 42  ILAVIALCFVPESPHWLVAKKRYEDAR 68
           I+       +PESP WL++K +Y +AR
Sbjct: 219 IIMFFGCVILPESPRWLISKCKYAEAR 245


>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)

Query: 163  ETEVF-VVFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTLYIWGTYGFYGIVSLMG- 220
            +T+ F +  N K +SGG G     G IFG + + + I  V    + G     G  +    
Sbjct: 1124 DTKTFRIATNYKAKSGGWGSPDVAGLIFGLMLSVLLIFFVTFFIVRGHRRLEGSKAAKNP 1183

Query: 221  CTVLYFILPETEGKKLNEIENHF--TGIRKLTNQVYRSKRRPQNEVSKMQEMKGATNP 276
             T L    P  +G +  +   HF  T  R L  Q ++  R P+ +V  M    GA  P
Sbjct: 1184 HTRLDENGPTADGAQ-TDSPAHFETTRFRTLPGQSHK-VRSPERQVLVMGNDVGAVYP 1239


>SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 135 LYARTHIMSGVSLNAERVVTDVNATLTSETEVFVVFNAKTRSGGAGLASAVGYIFGFLTN 194
           L +RTH+   + L  ++ +  V + + + +   V+F+  TR G A LA  V +I G  T 
Sbjct: 184 LTSRTHLAEFIPLIRQKEIDTVKSEIAANSAFSVIFDGNTRFGEA-LAIIVRFIDGEWTV 242

Query: 195 KMYISMVDTL 204
           +  +  ++ L
Sbjct: 243 QQRLIKLEIL 252


>SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)
          Length = 292

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 50  FVPESPHWLVAKKRYEDA 67
           F+PESP WL+A+ + ++A
Sbjct: 132 FIPESPRWLIAENKLDEA 149


>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
          Length = 1118

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 42  ILAVIALCFVPESPHWLVAKKRYEDAR 68
           IL ++    +PE+P WL+A  R E+AR
Sbjct: 812 ILFLVFWRLLPETPRWLIAHGRLEEAR 838


>SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 225 YFILPETEGKKLNEIENHFTGIRKLT 250
           YF++PET+G+ +++I   F G   +T
Sbjct: 23  YFLVPETKGRSIDDITRQFRGDSHIT 48


>SB_45969| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.11)
          Length = 735

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)

Query: 192 LTNKMYISMVDTLYI-WGTYGFYGIVSLMGCTVLYFILPETEGKKLNEIENHFTGIRKLT 250
           LT K++ +++D L+  +G        + +GC  L   L   E   L E E H   + K  
Sbjct: 587 LTTKLHHTLLDGLHRNFGWCAVLNATAFVGCNYLAKFLSNDESPALAEKERHDKALEKYQ 646

Query: 251 NQVYRSKRRPQ 261
               R ++R Q
Sbjct: 647 RDYGRYQQRRQ 657


>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
          Length = 363

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 40  APILAVIALC-FVPESPHWLVAKKRYEDARKTYAVSIFQMLEAPIDK 85
           AP LA++    ++ ESP WL+ K R ++A +       +  E P+DK
Sbjct: 270 APGLAILLFWKWIFESPRWLLTKGRLDEAHEILVNFGGKSKEQPLDK 316


>SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)
          Length = 549

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 50  FVPESPHWLVAKKRYEDAR 68
           ++PESP WLV + R ++A+
Sbjct: 194 YIPESPRWLVTRGRLDEAQ 212


>SB_39928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 50 FVPESPHWLVAKKRYEDAR 68
          ++PESP WLV + R ++A+
Sbjct: 2  YIPESPRWLVTRGRLDEAQ 20


>SB_36076| Best HMM Match : Ins134_P3_kin (HMM E-Value=0.00031)
          Length = 267

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 211 GFYGIVSLMGCTVLYFILPETEGKKLNEIENHFTGIRKLTNQVYRSKRRPQNEVSKMQEM 270
           G+ G+ S     + Y  L   EG++  E+ N F+G+++    ++  K+ PQN   K +  
Sbjct: 130 GYEGMPSFPKDMLQYIHLLLGEGEE--EVGNFFSGVKRKNIYIFWRKKDPQNVPLKFEIC 187

Query: 271 KGA 273
            G+
Sbjct: 188 AGS 190


>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
          Length = 3999

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 148  NAERVVTDVNATLTSETEVFVVFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTL 204
            N ++V  +V  +L ++T      N +  SGG  + + V YI G  T ++ + +  TL
Sbjct: 3513 NNQKVYLEVEESLVTKTVTKTPVNVRVESGGEVVMAPVSYIVG--TGEVALELNGTL 3567


>SB_9941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 211 GFYGIVSLMGCTVLYFILPETEGKKLNEIENHFTGIRKLTNQVYRSKRRPQNEVSKMQEM 270
           G+ G+ S     + Y  L   EG++  E+ N F+G+++    ++  K+ PQN   K +  
Sbjct: 57  GYEGMPSFPKDMLQYIHLLLGEGEE--EVGNFFSGVKRKNIYIFWRKKDPQNVPLKFEIC 114

Query: 271 KGA 273
            G+
Sbjct: 115 AGS 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,946,986
Number of Sequences: 59808
Number of extensions: 286372
Number of successful extensions: 856
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 21
length of query: 285
length of database: 16,821,457
effective HSP length: 81
effective length of query: 204
effective length of database: 11,977,009
effective search space: 2443309836
effective search space used: 2443309836
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)