Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000527-TA|BGIBMGA000527-PA|IPR005828|General substrate
transporter
         (285 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     29   0.062
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 0.062
 Identities = 13/43 (30%), Positives = 26/43 (60%)

Query: 239 IENHFTGIRKLTNQVYRSKRRPQNEVSKMQEMKGATNPTFEND 281
           +E+    +RKL ++++  + +P + + K+ +  G TN TFE D
Sbjct: 77  LEDLDCSLRKLNSRLFVIRGQPADALPKLFKEWGTTNLTFEED 119


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 199 SMVDTLYIWGTYGFYGI 215
           S V T+Y  G+YG YGI
Sbjct: 139 SYVSTVYSEGSYGEYGI 155


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 199 SMVDTLYIWGTYGFYGI 215
           S V T+Y  G+YG YGI
Sbjct: 229 SYVSTVYSEGSYGEYGI 245


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 179 AGLASAVGYIFGFLTNKMYISMVDTLYIWGTYGFYGIV 216
           AGL S +GY +     + ++ + DT  +   +G  GI+
Sbjct: 304 AGLLSVLGYKYITPLIQKHLKIHDTCGVHNLHGMPGIL 341


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 230  ETEGKKLNEIENHFTGIRKLTN 251
            E E +K + +    TG+RK TN
Sbjct: 1164 EMEVRKTSALTTVLTGLRKYTN 1185


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 230  ETEGKKLNEIENHFTGIRKLTN 251
            E E +K + +    TG+RK TN
Sbjct: 1160 EMEVRKTSALTTVLTGLRKYTN 1181


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,731
Number of Sequences: 429
Number of extensions: 2493
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 285
length of database: 140,377
effective HSP length: 57
effective length of query: 228
effective length of database: 115,924
effective search space: 26430672
effective search space used: 26430672
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)