GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000527-TA|BGIBMGA000527-PA|IPR005828|General substrate
transporter
         (285 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    28   0.091
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    28   0.091
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.49 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    24   1.5  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    21   7.9  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   7.9  

>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 197 YISMVDTLYIWGTYGFYGIVSLMGCTV-LYFILPETEGK 234
           Y    D L +W T+G+Y I++++ C   L+FI    +G+
Sbjct: 197 YYLQADML-LWHTFGYYHILAMLNCLCSLWFINCTAKGR 234


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)

Query: 197 YISMVDTLYIWGTYGFYGIVSLMGCTV-LYFILPETEGK 234
           Y    D L +W T+G+Y I++++ C   L+FI    +G+
Sbjct: 197 YYLQADML-LWHTFGYYHILAMLNCLCSLWFINCTAKGR 234


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 239 IENHFTGIRKLTNQVYRSKRRPQNEVSKMQEMKGATNPTFEND 281
           +E+    +RKL ++++  + +P + + K+ +  G T  TFE D
Sbjct: 73  LEDLDRSLRKLNSRLFVIRGQPADALPKLFKEWGTTALTFEED 115


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 205 YIWGTYGFYGIVSLMGCTVLYFILPETE 232
           Y +  Y F+G+    G  ++Y I  +TE
Sbjct: 113 YCYYYYAFFGVHLAYGVVIIYSICVQTE 140


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 240 ENHFTGIRKLTNQVYRSKRRPQNEVSKMQEMKG 272
           E H  G+RK+   + ++K     E+ +  + KG
Sbjct: 76  EKHKEGVRKVIRHLIKNKPSWWQELQEKYDPKG 108


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)

Query: 194 NKMY----ISMVDTLYIWGTYGFYGIVSLMGCT 222
           NK+Y    +  + T  IW  Y  Y +  L  CT
Sbjct: 229 NKLYGHQLLLTILTYLIWTIYEMYHLAILWSCT 261


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.137    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,879
Number of Sequences: 317
Number of extensions: 2196
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 285
length of database: 114,650
effective HSP length: 56
effective length of query: 229
effective length of database: 96,898
effective search space: 22189642
effective search space used: 22189642
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)