Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000527-TA|BGIBMGA000527-PA|IPR005828|General substrate
transporter
(285 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0) 55 8e-08
SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7) 36 0.029
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28) 36 0.050
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03) 33 0.35
SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15) 31 0.82
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0) 31 1.4
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015) 30 2.5
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 3.3
SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_45969| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.11) 29 4.4
SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034) 29 4.4
SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05) 29 5.8
SB_39928| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_36076| Best HMM Match : Ins134_P3_kin (HMM E-Value=0.00031) 28 7.6
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 28 7.6
SB_9941| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 512
Score = 54.8 bits (126), Expect = 8e-08
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 169 VFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTLYIWGTYGFYGIVSLMGCTVLYFIL 228
+F + R + +++ + F K ++++ D + I GTY FYG +S +G + +
Sbjct: 424 IFPLQARGIASSISTLCNWSLAFAVTKTFVNIEDAITIQGTYWFYGGLSFLGFLFVLMFV 483
Query: 229 PETEGKKLNEIENHFTG 245
PET+GK L +IE F G
Sbjct: 484 PETKGKTLEQIERLFDG 500
Score = 33.5 bits (73), Expect = 0.20
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 41 PILAVIALCFVPESPHWLVAKKRYEDA 67
P L V+ + FVPE+P W ++ KR DA
Sbjct: 210 PALLVVLMFFVPETPRWSLSHKRRRDA 236
>SB_47688| Best HMM Match : ATP_synt_H (HMM E-Value=7)
Length = 124
Score = 36.3 bits (80), Expect = 0.029
Identities = 15/71 (21%), Positives = 37/71 (52%)
Query: 169 VFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTLYIWGTYGFYGIVSLMGCTVLYFIL 228
+F + + LA+ + + + ++ ++ ++ GT+ FYG++ ++ +Y +
Sbjct: 9 IFPSGIKGRAFSLATVLNWGTNVFVSFTFLDLLGSIGTSGTFFFYGLICVIAIVFIYKYV 68
Query: 229 PETEGKKLNEI 239
PET+ K L +I
Sbjct: 69 PETKNKTLEQI 79
>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
Length = 456
Score = 35.5 bits (78), Expect = 0.050
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 43 LAVIALCFVPESPHWLVAKKRYEDARKT 70
L V+ + F+PE+ WL+AKK+ ARKT
Sbjct: 208 LLVVLMAFMPETARWLIAKKKETRARKT 235
>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
Length = 201
Score = 32.7 bits (71), Expect = 0.35
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 196 MYISMVDTLYIWGTYGFYGIVSLMGCTVLYFILPETEGKKLNEIENHFTGIRKLTNQVYR 255
++ ++ LY + F +V++ T +F +PET+G+ + +I +HF G +YR
Sbjct: 132 VFTAIAVALYPYTFIVFMALVAIFW-TFTFFFVPETKGRTIEDITDHFRG-GDSRCVMYR 189
Query: 256 SKRRPQNEVS 265
R + EV+
Sbjct: 190 GLRGHRQEVN 199
>SB_18740| Best HMM Match : MFS_1 (HMM E-Value=1.1e-15)
Length = 839
Score = 31.5 bits (68), Expect = 0.82
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 11/133 (8%)
Query: 103 CVLLVHYTGKR-PLAFFSTGVAGICCILVAIYDLYARTHIMSGVSLNAERVVTDVNATLT 161
C L+ G+R P A F + G C+LV + +THI + +L V+ N +T
Sbjct: 369 CWFLIGRYGRRVPYAAFEI-IGGTACMLVLAFP---KTHIAAITTLAMIGKVSVSNNFMT 424
Query: 162 SETEVFVVFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTLYIWGTYG--FYGIVSL- 218
S ++ R+ G G+AS + + G + ++ M + + T +G++ L
Sbjct: 425 SYVFTVELYPTIIRNIGLGVASTMARVGGIVA-PYFVLMGELPDVDNTVPMVIFGVLGLA 483
Query: 219 MGCTVLYFILPET 231
G VL+ LPET
Sbjct: 484 AGVAVLF--LPET 494
Score = 29.5 bits (63), Expect = 3.3
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 51 VPESPHWLVAKKRYEDARK 69
+PE+P WL+A+ R ++A K
Sbjct: 252 IPETPRWLIAQNRLDEAHK 270
>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 493
Score = 30.7 bits (66), Expect = 1.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 42 ILAVIALCFVPESPHWLVAKKRYEDAR 68
I+ +PESP WL++K +Y +AR
Sbjct: 219 IIMFFGCVILPESPRWLISKCKYAEAR 245
>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 30.7 bits (66), Expect = 1.4
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 6/118 (5%)
Query: 163 ETEVF-VVFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTLYIWGTYGFYGIVSLMG- 220
+T+ F + N K +SGG G G IFG + + + I V + G G +
Sbjct: 1124 DTKTFRIATNYKAKSGGWGSPDVAGLIFGLMLSVLLIFFVTFFIVRGHRRLEGSKAAKNP 1183
Query: 221 CTVLYFILPETEGKKLNEIENHF--TGIRKLTNQVYRSKRRPQNEVSKMQEMKGATNP 276
T L P +G + + HF T R L Q ++ R P+ +V M GA P
Sbjct: 1184 HTRLDENGPTADGAQ-TDSPAHFETTRFRTLPGQSHK-VRSPERQVLVMGNDVGAVYP 1239
>SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 406
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 135 LYARTHIMSGVSLNAERVVTDVNATLTSETEVFVVFNAKTRSGGAGLASAVGYIFGFLTN 194
L +RTH+ + L ++ + V + + + + V+F+ TR G A LA V +I G T
Sbjct: 184 LTSRTHLAEFIPLIRQKEIDTVKSEIAANSAFSVIFDGNTRFGEA-LAIIVRFIDGEWTV 242
Query: 195 KMYISMVDTL 204
+ + ++ L
Sbjct: 243 QQRLIKLEIL 252
>SB_17113| Best HMM Match : Sugar_tr (HMM E-Value=0.015)
Length = 292
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 50 FVPESPHWLVAKKRYEDA 67
F+PESP WL+A+ + ++A
Sbjct: 132 FIPESPRWLIAENKLDEA 149
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 42 ILAVIALCFVPESPHWLVAKKRYEDAR 68
IL ++ +PE+P WL+A R E+AR
Sbjct: 812 ILFLVFWRLLPETPRWLIAHGRLEEAR 838
>SB_19714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 29.5 bits (63), Expect = 3.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 225 YFILPETEGKKLNEIENHFTGIRKLT 250
YF++PET+G+ +++I F G +T
Sbjct: 23 YFLVPETKGRSIDDITRQFRGDSHIT 48
>SB_45969| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.11)
Length = 735
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 192 LTNKMYISMVDTLYI-WGTYGFYGIVSLMGCTVLYFILPETEGKKLNEIENHFTGIRKLT 250
LT K++ +++D L+ +G + +GC L L E L E E H + K
Sbjct: 587 LTTKLHHTLLDGLHRNFGWCAVLNATAFVGCNYLAKFLSNDESPALAEKERHDKALEKYQ 646
Query: 251 NQVYRSKRRPQ 261
R ++R Q
Sbjct: 647 RDYGRYQQRRQ 657
>SB_18704| Best HMM Match : MFS_1 (HMM E-Value=0.034)
Length = 363
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 40 APILAVIALC-FVPESPHWLVAKKRYEDARKTYAVSIFQMLEAPIDK 85
AP LA++ ++ ESP WL+ K R ++A + + E P+DK
Sbjct: 270 APGLAILLFWKWIFESPRWLLTKGRLDEAHEILVNFGGKSKEQPLDK 316
>SB_31847| Best HMM Match : Sugar_tr (HMM E-Value=4.6e-05)
Length = 549
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 50 FVPESPHWLVAKKRYEDAR 68
++PESP WLV + R ++A+
Sbjct: 194 YIPESPRWLVTRGRLDEAQ 212
>SB_39928| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 50 FVPESPHWLVAKKRYEDAR 68
++PESP WLV + R ++A+
Sbjct: 2 YIPESPRWLVTRGRLDEAQ 20
>SB_36076| Best HMM Match : Ins134_P3_kin (HMM E-Value=0.00031)
Length = 267
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 211 GFYGIVSLMGCTVLYFILPETEGKKLNEIENHFTGIRKLTNQVYRSKRRPQNEVSKMQEM 270
G+ G+ S + Y L EG++ E+ N F+G+++ ++ K+ PQN K +
Sbjct: 130 GYEGMPSFPKDMLQYIHLLLGEGEE--EVGNFFSGVKRKNIYIFWRKKDPQNVPLKFEIC 187
Query: 271 KGA 273
G+
Sbjct: 188 AGS 190
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 148 NAERVVTDVNATLTSETEVFVVFNAKTRSGGAGLASAVGYIFGFLTNKMYISMVDTL 204
N ++V +V +L ++T N + SGG + + V YI G T ++ + + TL
Sbjct: 3513 NNQKVYLEVEESLVTKTVTKTPVNVRVESGGEVVMAPVSYIVG--TGEVALELNGTL 3567
>SB_9941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 211 GFYGIVSLMGCTVLYFILPETEGKKLNEIENHFTGIRKLTNQVYRSKRRPQNEVSKMQEM 270
G+ G+ S + Y L EG++ E+ N F+G+++ ++ K+ PQN K +
Sbjct: 57 GYEGMPSFPKDMLQYIHLLLGEGEE--EVGNFFSGVKRKNIYIFWRKKDPQNVPLKFEIC 114
Query: 271 KGA 273
G+
Sbjct: 115 AGS 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.324 0.137 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,946,986
Number of Sequences: 59808
Number of extensions: 286372
Number of successful extensions: 856
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 21
length of query: 285
length of database: 16,821,457
effective HSP length: 81
effective length of query: 204
effective length of database: 11,977,009
effective search space: 2443309836
effective search space used: 2443309836
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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