Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000526-TA|BGIBMGA000526-PA|IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold, IPR011129|Cold
shock protein
         (259 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)                   54   1e-07
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)                     31   0.94 
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_50682| Best HMM Match : CSD (HMM E-Value=2.1e-38)
          Length = 80

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 5/71 (7%)

Query: 34  IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
           ++ + +GTVKWFN + GYGFI    + +D+FVH  AI  +      +S+ +G+AV F   
Sbjct: 12  MSNRQNGTVKWFNDEKGYGFIT-PQSGDDLFVHFKAIQSD----GFKSLKEGQAVTFVAT 66

Query: 94  AGEKGFEAAGV 104
            G+KG +A  V
Sbjct: 67  RGQKGMQAEEV 77


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 97  KGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 127
           +G EA+ VTGP GEPV+GS YA D+RR  +R
Sbjct: 13  QGLEASNVTGPDGEPVQGSKYAPDRRRRNNR 43


>SB_56316| Best HMM Match : SMC_C (HMM E-Value=2.4)
          Length = 1023

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 48  KSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGP 107
           K G G +  ND K+   + +  +   + +    SV DG  VE AV    +  EA GV+ P
Sbjct: 194 KIGSGVVYYNDPKD--LLSRLELLGGSIQAGNDSVKDGNIVERAVYISSRDREACGVSRP 251

Query: 108 GGEPVKGSP 116
               VK +P
Sbjct: 252 DDFTVKMNP 260


>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 71  ARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGG-EPVKGSPYAADKRRG 124
           AR    +AVR    GE    +V  G  G    G  G GG E V+G+PY  ++  G
Sbjct: 395 AREYLARAVREGLRGEEGSPSVFLGGGGRGGGGGDGGGGGEGVQGTPYTPEEEEG 449


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 35  AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 66
           AEK  G V   ++K  +GFI R D   ++F H
Sbjct: 201 AEKYQGVVS--SMKESFGFIERADKVSEIFFH 230


>SB_45652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 34  IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGD 84
           +A+  +    +  VKSGY   +  DTK +V   Q A     P+   R+ GD
Sbjct: 60  MADGYTAFFSFSRVKSGYSVFSGKDTKAEVPSLQAAQHLPEPKGRKRTTGD 110


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.309    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,688,457
Number of Sequences: 59808
Number of extensions: 143295
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 6
length of query: 259
length of database: 16,821,457
effective HSP length: 81
effective length of query: 178
effective length of database: 11,977,009
effective search space: 2131907602
effective search space used: 2131907602
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)