Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000526-TA|BGIBMGA000526-PA|IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold, IPR011129|Cold
shock protein
(259 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-... 211 2e-53
UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4; ... 200 2e-50
UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4; Endopterygot... 169 6e-41
UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular orga... 164 2e-39
UniRef50_O46173 Cluster: Y-box protein; n=5; cellular organisms|... 160 4e-38
UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular o... 158 1e-37
UniRef50_P67809 Cluster: Nuclease sensitive element-binding prot... 157 2e-37
UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhanc... 157 3e-37
UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular org... 153 3e-36
UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box fact... 152 1e-35
UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius auratus... 151 1e-35
UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21; Tetrapod... 151 2e-35
UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias... 149 9e-35
UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box prot... 148 1e-34
UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona intesti... 146 5e-34
UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: ... 136 7e-31
UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;... 135 1e-30
UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n... 116 5e-25
UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box ... 104 3e-21
UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1; ... 101 2e-20
UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia japo... 97 5e-19
UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ ce... 91 3e-17
UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis el... 89 1e-16
UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n... 87 4e-16
UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n... 86 7e-16
UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;... 84 3e-15
UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triti... 79 1e-13
UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus laev... 78 2e-13
UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep: MG... 76 8e-13
UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2; ... 73 7e-12
UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella ve... 73 7e-12
UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus lu... 71 3e-11
UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12; Bacteria... 69 9e-11
UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB... 67 4e-10
UniRef50_O65639 Cluster: Glycine-rich protein; n=8; Magnoliophyt... 65 1e-09
UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona intesti... 65 1e-09
UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep: GA1... 65 2e-09
UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep: ... 65 2e-09
UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein; ... 64 4e-09
UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154; Ba... 63 6e-09
UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular... 63 8e-09
UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:... 62 1e-08
UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain ... 62 1e-08
UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1; ... 62 1e-08
UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28; Bac... 62 1e-08
UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1; ma... 62 2e-08
UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila melanog... 62 2e-08
UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n... 61 2e-08
UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38; Gam... 61 2e-08
UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein; ... 61 3e-08
UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7; Bact... 60 4e-08
UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39; Gammapro... 60 5e-08
UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3; Gammaproteobac... 60 7e-08
UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;... 59 1e-07
UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp. M... 59 1e-07
UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1; Ostre... 59 1e-07
UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2; Thei... 59 1e-07
UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26; cel... 59 1e-07
UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367; ro... 59 1e-07
UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2; Bacteria... 58 2e-07
UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29; Bac... 58 2e-07
UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein; ... 58 2e-07
UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA - Myxoco... 58 2e-07
UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB... 58 3e-07
UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2; ... 58 3e-07
UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n... 58 3e-07
UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3; ... 57 4e-07
UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein; ... 56 9e-07
UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep: ... 56 9e-07
UniRef50_P39158 Cluster: Cold shock protein cspC; n=41; Bacteria... 56 9e-07
UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10; Bac... 56 9e-07
UniRef50_UPI0000589074 Cluster: PREDICTED: similar to ENSANGP000... 56 1e-06
UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep... 56 1e-06
UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep... 55 2e-06
UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator Cs... 55 2e-06
UniRef50_P72188 Cluster: Cold shock protein capA; n=23; Proteoba... 55 2e-06
UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24... 54 3e-06
UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protei... 54 3e-06
UniRef50_Q834D5 Cluster: Cold-shock domain family protein; n=1; ... 53 6e-06
UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2; Bacteroi... 53 6e-06
UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5; Deinoc... 53 6e-06
UniRef50_Q8D046 Cluster: Cold shock protein; n=14; Enterobacteri... 53 6e-06
UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter ... 53 6e-06
UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2; Acti... 53 8e-06
UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44; Bacteria... 53 8e-06
UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59; Alphapro... 53 8e-06
UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:... 52 1e-05
UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain ... 52 1e-05
UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein; ... 52 1e-05
UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12; Gammapro... 52 1e-05
UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;... 52 1e-05
UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=... 52 1e-05
UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein; ... 52 1e-05
UniRef50_Q8G880 Cluster: Cold shock protein; n=3; Bifidobacteriu... 52 2e-05
UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein; ... 52 2e-05
UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2; C... 52 2e-05
UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:... 52 2e-05
UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep: AG... 51 3e-05
UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78; B... 51 3e-05
UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein; ... 50 4e-05
UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2; M... 50 4e-05
UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7; Pr... 50 6e-05
UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6; Gammaproteobac... 50 6e-05
UniRef50_A0YBV1 Cluster: CspA-like protein; n=17; Proteobacteria... 50 8e-05
UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 - Brad... 49 1e-04
UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein; ... 49 1e-04
UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein; ... 49 1e-04
UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomon... 49 1e-04
UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7; Flavobacterial... 48 2e-04
UniRef50_Q82ZV8 Cluster: Cold-shock domain family protein; n=7; ... 48 2e-04
UniRef50_Q1B3F5 Cluster: Cold-shock DNA-binding domain protein; ... 48 2e-04
UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein; ... 48 2e-04
UniRef50_A0Z255 Cluster: Cold shock protein, CspA family-like pr... 48 2e-04
UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putati... 48 3e-04
UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1; ... 48 3e-04
UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium ... 47 4e-04
UniRef50_Q6YPQ4 Cluster: Cold shock protein; n=3; Firmicutes|Rep... 47 4e-04
UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6; c... 47 4e-04
UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12; Gam... 47 4e-04
UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9; Chlo... 47 5e-04
UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular organ... 47 5e-04
UniRef50_Q7NNC3 Cluster: Gsr0488 protein; n=1; Gloeobacter viola... 47 5e-04
UniRef50_P46449 Cluster: Cold shock-like protein cspD; n=31; Bac... 47 5e-04
UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288; Ba... 47 5e-04
UniRef50_Q7VLQ6 Cluster: Cold shock-like protein CspD; n=6; Prot... 46 7e-04
UniRef50_Q0I3L0 Cluster: Cold shock-like protein; n=2; Proteobac... 46 7e-04
UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain ... 46 7e-04
UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein; ... 46 7e-04
UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4; Brucella|... 46 0.001
UniRef50_Q5ZWM5 Cluster: Cold shock domain family protein; n=6; ... 46 0.001
UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter ... 46 0.001
UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;... 45 0.002
UniRef50_Q28PH1 Cluster: Cold-shock DNA-binding domain protein; ... 45 0.002
UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein; ... 45 0.002
UniRef50_O33052 Cluster: Small cold-shock protein; n=7; Coryneba... 44 0.004
UniRef50_Q1VQ89 Cluster: Cold shock protein; n=8; Bacteroidetes|... 44 0.005
UniRef50_Q03YA9 Cluster: Cold shock protein; n=1; Leuconostoc me... 44 0.005
UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas mobi... 43 0.007
UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein; ... 43 0.007
UniRef50_Q1AWL7 Cluster: Cold-shock DNA-binding domain protein; ... 43 0.007
UniRef50_Q0APJ7 Cluster: Cold-shock DNA-binding domain protein; ... 43 0.007
UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula b... 43 0.007
UniRef50_A2TNS0 Cluster: Cold shock protein; n=4; Bacteroidetes|... 43 0.007
UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:... 43 0.009
UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=... 43 0.009
UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain ... 43 0.009
UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38; A... 42 0.012
UniRef50_Q2RWM8 Cluster: Cold-shock DNA-binding domain protein; ... 42 0.012
UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1; C... 42 0.012
UniRef50_Q0C0S6 Cluster: Cold shock DNA-binding protein; n=1; Hy... 42 0.012
UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp... 42 0.012
UniRef50_A2U2L8 Cluster: Cold shock protein; n=3; Bacteroidetes|... 42 0.012
UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7; Halobacteriace... 42 0.016
UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12; Bac... 42 0.016
UniRef50_Q1AY27 Cluster: Cold-shock DNA-binding domain protein; ... 42 0.021
UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1; C... 42 0.021
UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3; Plas... 42 0.021
UniRef50_Q6F7A1 Cluster: Putative cold shock protein; n=2; Acine... 41 0.027
UniRef50_Q2RZT3 Cluster: Conserved domain protein; n=2; Saliniba... 41 0.027
UniRef50_Q1GHI4 Cluster: Cold-shock DNA-binding domain protein; ... 41 0.027
UniRef50_A0ACJ4 Cluster: Putative DNA-binding protein; n=3; Acti... 41 0.027
UniRef50_P0A985 Cluster: Cold shock-like protein cspH; n=24; Ent... 41 0.027
UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome s... 41 0.036
UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein; ... 41 0.036
UniRef50_Q6ALH9 Cluster: Hypothetical cold-shock protein; n=1; D... 40 0.048
UniRef50_A7BYF1 Cluster: Putative uncharacterized protein; n=1; ... 40 0.048
UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2; Rick... 40 0.048
UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precurs... 40 0.063
UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1; ... 40 0.063
UniRef50_Q4Q8I6 Cluster: RNA binding protein rbp16, putative; n=... 40 0.063
UniRef50_Q9ZAH1 Cluster: Cold shock protein C; n=10; Streptococc... 39 0.11
UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein; ... 39 0.11
UniRef50_A1SNP5 Cluster: Cold-shock protein, DNA-binding; n=26; ... 39 0.11
UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2; Flexibac... 38 0.19
UniRef50_Q4AG52 Cluster: Cold-shock protein, DNA-binding; n=3; B... 38 0.25
UniRef50_Q12K82 Cluster: Putative uncharacterized protein; n=1; ... 38 0.25
UniRef50_Q56922 Cluster: Major cold shock protein; n=31; Enterob... 38 0.25
UniRef50_UPI000150A0B6 Cluster: hypothetical protein TTHERM_0034... 38 0.33
UniRef50_A3X5Q6 Cluster: Putative uncharacterized protein; n=1; ... 38 0.33
UniRef50_A3WZM6 Cluster: Cold shock DNA binding protein; n=1; Ni... 38 0.33
UniRef50_Q5P4M3 Cluster: Probable cold shock family protein; n=1... 37 0.44
UniRef50_Q475L4 Cluster: Cold-shock protein, DNA-binding; n=1; R... 37 0.44
UniRef50_A4FKV9 Cluster: Putative DNA-binding protein; n=1; Sacc... 37 0.59
UniRef50_Q74JX5 Cluster: Cold shock protein; n=5; Lactobacillus|... 36 0.77
UniRef50_Q5L9T7 Cluster: Cold shock-like protein; n=2; Bacteroid... 36 0.77
UniRef50_A0X3F5 Cluster: Cold-shock DNA-binding domain protein; ... 36 0.77
UniRef50_A0UNB6 Cluster: Cold-shock DNA-binding domain protein; ... 36 0.77
UniRef50_UPI00006CB81E Cluster: conserved hypothetical protein; ... 36 1.4
UniRef50_Q4FUZ6 Cluster: Possible guanine-specific ribonuclease ... 36 1.4
UniRef50_Q9KI38 Cluster: Ysb; n=2; Agrobacterium tumefaciens|Rep... 36 1.4
UniRef50_A2SHE7 Cluster: Cold-shock DNA-binding domain; n=1; Met... 36 1.4
UniRef50_Q51929 Cluster: Major cold shock protein; n=74; Bacteri... 36 1.4
UniRef50_A6W4V4 Cluster: Putative cold-shock DNA-binding domain ... 35 1.8
UniRef50_A5EWK7 Cluster: Cold-shock DNA-binding domain protein; ... 35 1.8
UniRef50_A0BFX7 Cluster: Chromosome undetermined scaffold_105, w... 35 1.8
UniRef50_Q48493 Cluster: Major cold shock protein; n=50; Bacteri... 35 1.8
UniRef50_UPI00006CB6F6 Cluster: ''''Cold-shock'''' DNA-binding d... 35 2.4
UniRef50_Q5YVF2 Cluster: Putative cold shock protein; n=1; Nocar... 35 2.4
UniRef50_Q1YTJ3 Cluster: Cold shock protein; n=1; gamma proteoba... 35 2.4
UniRef50_Q127M7 Cluster: Cold-shock DNA-binding domain protein; ... 35 2.4
UniRef50_A2UVR3 Cluster: Cold-shock DNA-binding domain protein; ... 35 2.4
UniRef50_A1GFH1 Cluster: Cold-shock DNA-binding domain protein; ... 35 2.4
UniRef50_Q9HP26 Cluster: Cold shock protein; n=11; Halobacteriac... 34 3.1
UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6; Streptoc... 34 3.1
UniRef50_Q48AJ7 Cluster: Cold-shock DNA-binding domain family pr... 34 4.1
UniRef50_Q03EZ0 Cluster: Cold shock protein; n=1; Pediococcus pe... 34 4.1
UniRef50_A6E1A1 Cluster: Peptidase S49; n=2; Bacteria|Rep: Pepti... 34 4.1
UniRef50_Q9RBP7 Cluster: Cold shock protein 7.4; n=2; Rhodococcu... 33 5.5
UniRef50_A0CIJ2 Cluster: Chromosome undetermined scaffold_19, wh... 33 5.5
UniRef50_UPI000050F90E Cluster: COG1278: Cold shock proteins; n=... 33 7.2
UniRef50_Q6SK65 Cluster: Peptide synthetase; n=5; cellular organ... 33 7.2
UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia sola... 33 7.2
UniRef50_Q89KY2 Cluster: Bll4766 protein; n=5; Bradyrhizobiaceae... 33 9.5
UniRef50_Q5YWN0 Cluster: Putative uncharacterized protein; n=1; ... 33 9.5
UniRef50_Q84IJ3 Cluster: Cold shock protein; n=1; Janthinobacter... 33 9.5
UniRef50_Q6XYV4 Cluster: Transcriptional regulator; n=2; Spiropl... 33 9.5
UniRef50_A4V785 Cluster: Putative cold shock domain transmembran... 33 9.5
>UniRef50_A2A246 Cluster: Y-box protein; n=2; Bombyx mori|Rep: Y-box
protein - Bombyx mori (Silk moth)
Length = 272
Score = 211 bits (515), Expect = 2e-53
Identities = 98/98 (100%), Positives = 98/98 (100%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV
Sbjct: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 130
VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF
Sbjct: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 130
>UniRef50_Q5MGM1 Cluster: Putative uncharacterized protein; n=4;
cellular organisms|Rep: Putative uncharacterized protein
- Lonomia obliqua (Moth)
Length = 254
Score = 200 bits (489), Expect = 2e-50
Identities = 93/98 (94%), Positives = 95/98 (96%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI RNNPRKAVRSVGDGE VEFAV
Sbjct: 24 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEVVEFAV 83
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 130
VAGEKG EAAGVTGPGGEPVKGSPYAADKRRGY+RQY+
Sbjct: 84 VAGEKGCEAAGVTGPGGEPVKGSPYAADKRRGYYRQYY 121
>UniRef50_Q8IT93 Cluster: Y-box protein Ct-p50; n=4;
Endopterygota|Rep: Y-box protein Ct-p50 - Chironomus
tentans (Midge)
Length = 317
Score = 169 bits (411), Expect = 6e-41
Identities = 77/92 (83%), Positives = 84/92 (91%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
+IA KV+GTVKWFNVKSGYGFINRND K+D+FVHQ+AI +NNP+KAVRSVGDGE VEF V
Sbjct: 25 IIATKVTGTVKWFNVKSGYGFINRNDNKQDIFVHQSAIIKNNPKKAVRSVGDGEVVEFDV 84
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 124
VAGEKG EAA VTGP GEPVKGSPYAADKRRG
Sbjct: 85 VAGEKGSEAANVTGPEGEPVKGSPYAADKRRG 116
>UniRef50_A0NEN6 Cluster: ENSANGP00000031633; n=12; cellular
organisms|Rep: ENSANGP00000031633 - Anopheles gambiae
str. PEST
Length = 166
Score = 164 bits (398), Expect = 2e-39
Identities = 77/93 (82%), Positives = 83/93 (89%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
VIA KV+G VKWFNVKSGYGFINR DT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 5 VIATKVTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDV 64
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 125
V GEKG EAA VTGP GEPVKGS YAA+KRRG+
Sbjct: 65 VIGEKGNEAANVTGPQGEPVKGSQYAAEKRRGF 97
>UniRef50_O46173 Cluster: Y-box protein; n=5; cellular
organisms|Rep: Y-box protein - Drosophila melanogaster
(Fruit fly)
Length = 359
Score = 160 bits (388), Expect = 4e-38
Identities = 76/93 (81%), Positives = 83/93 (89%), Gaps = 1/93 (1%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIA NNP+KAVRSVGDGE VEF V
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDV 116
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 125
V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149
>UniRef50_P16989 Cluster: DNA-binding protein A; n=92; cellular
organisms|Rep: DNA-binding protein A - Homo sapiens
(Human)
Length = 372
Score = 158 bits (384), Expect = 1e-37
Identities = 75/98 (76%), Positives = 83/98 (84%), Gaps = 1/98 (1%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V+A KV GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V
Sbjct: 86 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 145
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 130
V GEKG EAA VTGP G PV+GS YAAD+RR Y R Y+
Sbjct: 146 VEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYY 182
>UniRef50_P67809 Cluster: Nuclease sensitive element-binding protein
1; n=65; Coelomata|Rep: Nuclease sensitive
element-binding protein 1 - Homo sapiens (Human)
Length = 324
Score = 157 bits (382), Expect = 2e-37
Identities = 75/97 (77%), Positives = 83/97 (85%), Gaps = 2/97 (2%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
VIA KV GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V
Sbjct: 54 VIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDV 113
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 129
V GEKG EAA VTGPGG PV+GS YAAD R ++R+Y
Sbjct: 114 VEGEKGAEAANVTGPGGVPVQGSKYAAD--RNHYRRY 148
>UniRef50_Q90650 Cluster: Rous sarcoma virus transcription enhancer
factor II; n=1; Gallus gallus|Rep: Rous sarcoma virus
transcription enhancer factor II - Gallus gallus
(Chicken)
Length = 298
Score = 157 bits (381), Expect = 3e-37
Identities = 75/98 (76%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V+A KV GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK + SVGDGE VEF V
Sbjct: 83 VLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDV 142
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 130
V GEKG EAA VTGP G PV+GS YAAD+RR Y R YF
Sbjct: 143 VEGEKGAEAANVTGPDGVPVEGSRYAADRRR-YRRGYF 179
>UniRef50_P41824 Cluster: Y-box factor homolog; n=2; cellular
organisms|Rep: Y-box factor homolog - Aplysia
californica (California sea hare)
Length = 253
Score = 153 bits (372), Expect = 3e-36
Identities = 72/91 (79%), Positives = 79/91 (86%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
+IA +VSGTVKWFNVKSGYGFINR+DTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V
Sbjct: 28 IIASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDV 87
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 123
V GEKG EAA VTGP G V+GS YAAD+RR
Sbjct: 88 VEGEKGNEAANVTGPEGSNVQGSKYAADRRR 118
>UniRef50_UPI00005843EB Cluster: PREDICTED: similar to Y-Box factor;
n=4; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to Y-Box factor - Strongylocentrotus purpuratus
Length = 326
Score = 152 bits (368), Expect = 1e-35
Identities = 73/91 (80%), Positives = 77/91 (84%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V+A KVSGTVKWFNVK+GYGFINR+DTKEDVFVHQ+AI RNNPRK RSVGDGE VEF V
Sbjct: 19 VLATKVSGTVKWFNVKNGYGFINRDDTKEDVFVHQSAIVRNNPRKYQRSVGDGEVVEFDV 78
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 123
V G KG EAA VTGP G PV GS YAADKRR
Sbjct: 79 VEGTKGNEAARVTGPEGAPVVGSKYAADKRR 109
>UniRef50_O13015 Cluster: Y box protein 2; n=1; Carassius
auratus|Rep: Y box protein 2 - Carassius auratus
(Goldfish)
Length = 297
Score = 151 bits (367), Expect = 1e-35
Identities = 73/97 (75%), Positives = 78/97 (80%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
VIA V GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V
Sbjct: 16 VIATGVEGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDV 75
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 129
V KG EAA VTGPGG PVKGS YA +KRR R Y
Sbjct: 76 VEAAKGSEAANVTGPGGIPVKGSRYAPNKRRFRRRFY 112
>UniRef50_Q9Y2T7 Cluster: Y-box-binding protein 2; n=21;
Tetrapoda|Rep: Y-box-binding protein 2 - Homo sapiens
(Human)
Length = 364
Score = 151 bits (366), Expect = 2e-35
Identities = 70/91 (76%), Positives = 78/91 (85%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V+A +V GTVKWFNV++GYGFINRNDTKEDVFVHQTAI RNNPRK +RSVGDGE VEF V
Sbjct: 89 VLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDV 148
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 123
V GEKG EA VTGPGG PVKGS YA ++R+
Sbjct: 149 VEGEKGAEATNVTGPGGVPVKGSRYAPNRRK 179
>UniRef50_Q90WH1 Cluster: Cold-shock domain protein; n=1; Oryzias
latipes|Rep: Cold-shock domain protein - Oryzias latipes
(Medaka fish) (Japanese ricefish)
Length = 366
Score = 149 bits (360), Expect = 9e-35
Identities = 69/93 (74%), Positives = 78/93 (83%), Gaps = 1/93 (1%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
V GTVKWFNV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE VEF V+ K
Sbjct: 3 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAK 62
Query: 98 GFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 130
G EAA VTGPGG PVKGS YA +KRR + R++F
Sbjct: 63 GSEAANVTGPGGIPVKGSRYAPNKRR-FRRRFF 94
>UniRef50_UPI00015B4254 Cluster: PREDICTED: similar to Y-box protein
Ct-p40; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to Y-box protein Ct-p40 - Nasonia vitripennis
Length = 335
Score = 148 bits (359), Expect = 1e-34
Identities = 73/98 (74%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
+IA KV+GTVKWFNVKSGYGFINR+ D+FV Q I+ N P KAVRSVGDGE VEF V
Sbjct: 64 IIANKVTGTVKWFNVKSGYGFINRSVFHFDIFVCQRCISNNLPSKAVRSVGDGEVVEFDV 123
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 130
V GEKG EAA VTGP GE VKGSPYAADKRRGY RQY+
Sbjct: 124 VIGEKGNEAANVTGPDGEAVKGSPYAADKRRGY-RQYY 160
>UniRef50_Q4H2L8 Cluster: Y-box protein 1/2/3; n=2; Ciona
intestinalis|Rep: Y-box protein 1/2/3 - Ciona
intestinalis (Transparent sea squirt)
Length = 320
Score = 146 bits (354), Expect = 5e-34
Identities = 69/98 (70%), Positives = 80/98 (81%), Gaps = 2/98 (2%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V+A SG VKWFNV++GYGF+NR+D KEDVF+HQTAI +NNP+K +RSVGDGE VEF V
Sbjct: 21 VLASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDV 80
Query: 93 VAGEKGF-EAAGVTGPGGEPVKGSPYAADKRRGYHRQY 129
V GEKG EAA VTGP GEPVKGS YAAD+RR Y +Y
Sbjct: 81 VEGEKGLPEAANVTGPNGEPVKGSKYAADRRR-YKPRY 117
>UniRef50_Q9XSU1 Cluster: DNA binding protein; n=3; Amniota|Rep: DNA
binding protein - Canis familiaris (Dog)
Length = 96
Score = 136 bits (328), Expect = 7e-31
Identities = 64/85 (75%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 46 NVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVT 105
NV++GYGFINRNDTKEDVFVHQTAI +NNPRK +RSVGDGE V+F VV GEKG EAA VT
Sbjct: 1 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVQFDVVEGEKGAEAANVT 60
Query: 106 GPGGEPVKGSPYAADKRRGYHRQYF 130
GP G PV+GS YAAD+RR Y R Y+
Sbjct: 61 GPDGVPVEGSRYAADRRR-YRRGYY 84
>UniRef50_O62213 Cluster: Putative uncharacterized protein cey-1;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-1 - Caenorhabditis elegans
Length = 208
Score = 135 bits (326), Expect = 1e-30
Identities = 62/89 (69%), Positives = 69/89 (77%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADK 121
V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 76 VEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>UniRef50_UPI0000DC0B3F Cluster: UPI0000DC0B3F related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B3F UniRef100 entry -
Rattus norvegicus
Length = 292
Score = 116 bits (280), Expect = 5e-25
Identities = 59/95 (62%), Positives = 68/95 (71%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
VIA KV GT+K V +G G INRNDTKEDVFVHQTA+ +N+PRK +RSVGD E VEF
Sbjct: 26 VIATKVLGTMKCSIVWNGCGLINRNDTKEDVFVHQTAMKKNDPRKYLRSVGDAETVEFDF 85
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 127
V GEK EAA VTG GG PV+ S Y AD+ H+
Sbjct: 86 VEGEKDVEAASVTGLGGVPVQDSKYTADRNHCKHQ 120
>UniRef50_Q23960 Cluster: Y-box protein; n=2; Dugesia|Rep: Y-box
protein - Dugesia japonica (Planarian)
Length = 266
Score = 104 bits (249), Expect = 3e-21
Identities = 48/90 (53%), Positives = 63/90 (70%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
++G VKWFNVK GYGF+ RND +ED+F+HQ+AI ++NP +SVG+GE + F +V G K
Sbjct: 29 ITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAK 88
Query: 98 GFEAAGVTGPGGEPVKGSPYAADKRRGYHR 127
G EAA V+ G+ VKGS YA RG R
Sbjct: 89 GNEAANVSAIDGKCVKGSEYALRYPRGRGR 118
>UniRef50_Q17JD9 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 192
Score = 101 bits (241), Expect = 2e-20
Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 9/93 (9%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
+++++GTVKWFN K G+GFI R+DT ED+FVH++ I + N +S+GDGE VEF ++A
Sbjct: 31 SKRITGTVKWFNAKDGFGFITRHDTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEFGLIA 90
Query: 95 GEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHR 127
+ VTGPG +PVKGSP+ A +RG HR
Sbjct: 91 SK-------VTGPGFKPVKGSPFVA--KRGGHR 114
>UniRef50_A4V6J7 Cluster: Y-Box factor protein; n=1; Dugesia
japonica|Rep: Y-Box factor protein - Dugesia japonica
(Planarian)
Length = 178
Score = 96.7 bits (230), Expect = 5e-19
Identities = 47/79 (59%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G VKW+NVK GYGFI+R+D EDVFVHQ+AI+R P K +S+G+ E V F VV G KG
Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDEDVFVHQSAISRCQPGKQ-KSLGEDEDVLFDVVKGSKGN 63
Query: 100 EAAGVTGPGGEPVKGSPYA 118
EA VTGP G+ V GS +A
Sbjct: 64 EAMNVTGPNGDAVLGSKFA 82
>UniRef50_UPI00006A28C0 Cluster: Y-box-binding protein 2 (Germ
cell-specific Y-box-binding protein) (Contrin) (MSY2
homolog).; n=1; Xenopus tropicalis|Rep: Y-box-binding
protein 2 (Germ cell-specific Y-box-binding protein)
(Contrin) (MSY2 homolog). - Xenopus tropicalis
Length = 199
Score = 91.1 bits (216), Expect = 3e-17
Identities = 47/88 (53%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
V W+ + G ++ + + TAI RNNPRK +RSVGDGE VEF VV GEKG EA
Sbjct: 45 VPWYPMGRGV-HLHGGGARASLIGWDTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEA 103
Query: 102 AGVTGPGGEPVKGSPYAADKRRGYHRQY 129
A VTGPGG PVKGS +A ++RR R Y
Sbjct: 104 ANVTGPGGVPVKGSRFAPNRRRFRRRFY 131
>UniRef50_P91306 Cluster: Y-box protein 2; n=2; Caenorhabditis
elegans|Rep: Y-box protein 2 - Caenorhabditis elegans
Length = 267
Score = 88.6 bits (210), Expect = 1e-16
Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 92
I + G VKW++V YGFI+RND ++D+FVHQTAIA++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPY 117
V G+ G EAA VTGP G+ V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146
>UniRef50_UPI0000DC181B Cluster: UPI0000DC181B related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC181B UniRef100 entry -
Rattus norvegicus
Length = 210
Score = 87.0 bits (206), Expect = 4e-16
Identities = 40/74 (54%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Query: 46 NVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVT 105
++++ YG++ +N + DVFVHQTAI +NNPRK + + GD E VEF V+ GEK EAA +
Sbjct: 37 SLRNIYGYVGKNSSGNDVFVHQTAIKKNNPRKYLHTTGDRETVEFDVIEGEKDAEAANII 96
Query: 106 GPGGEPVKGSPYAA 119
GPGG V+GS YAA
Sbjct: 97 GPGG--VQGSQYAA 108
>UniRef50_UPI0000DC0B82 Cluster: UPI0000DC0B82 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC0B82 UniRef100 entry -
Rattus norvegicus
Length = 147
Score = 86.2 bits (204), Expect = 7e-16
Identities = 41/57 (71%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVE 89
VIA KV G V WFNV++GY FINRNDTKED FVHQT I +NNP K + SVGDGE VE
Sbjct: 91 VIAMKVLGIVTWFNVRNGYVFINRNDTKEDTFVHQTVIKKNNP-KYLHSVGDGETVE 146
>UniRef50_Q9XTJ6 Cluster: Putative uncharacterized protein cey-4;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein cey-4 - Caenorhabditis elegans
Length = 294
Score = 84.2 bits (199), Expect = 3e-15
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 88
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 89 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 118
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>UniRef50_Q75QN8 Cluster: Cold shock domain protein 3; n=2; Triticum
aestivum|Rep: Cold shock domain protein 3 - Triticum
aestivum (Wheat)
Length = 231
Score = 78.6 bits (185), Expect = 1e-13
Identities = 38/82 (46%), Positives = 55/82 (67%), Gaps = 5/82 (6%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
+ E+V GTVKWFNV G+GFI+ +D ED+FVHQ+AI + RS+ + +AVEF ++
Sbjct: 1 MGERVKGTVKWFNVTKGFGFISPDDGGEDLFVHQSAIKSD----GYRSLNENDAVEFEII 56
Query: 94 AGEKG-FEAAGVTGPGGEPVKG 114
G+ G +A+ VT PGG + G
Sbjct: 57 TGDDGRTKASDVTAPGGGALSG 78
>UniRef50_A1L2L1 Cluster: LOC100036881 protein; n=1; Xenopus
laevis|Rep: LOC100036881 protein - Xenopus laevis
(African clawed frog)
Length = 131
Score = 78.2 bits (184), Expect = 2e-13
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 6/82 (7%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
K++GT KWFN + GYGF+ +D D+FVHQ+ I + RS+ +GE VEF+V+ E
Sbjct: 3 KLTGTCKWFNAEKGYGFLTPDDGSPDIFVHQSTIHAD----GFRSLAEGEPVEFSVITDE 58
Query: 97 KG--FEAAGVTGPGGEPVKGSP 116
+ +AA VTGP G V+G+P
Sbjct: 59 RSGKLKAADVTGPNGAAVRGAP 80
>UniRef50_Q52KT6 Cluster: MGC115344 protein; n=2; Xenopus|Rep:
MGC115344 protein - Xenopus laevis (African clawed frog)
Length = 221
Score = 76.2 bits (179), Expect = 8e-13
Identities = 50/98 (51%), Positives = 56/98 (57%), Gaps = 31/98 (31%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V+A KV GTVKWFNV++GYGFINRNDTKEDVFVHQ A A N
Sbjct: 31 VLATKVQGTVKWFNVRNGYGFINRNDTKEDVFVHQGAEAAN------------------- 71
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQYF 130
V G KG PV+GS YAAD+RR Y R Y+
Sbjct: 72 VTGPKG-----------APVQGSRYAADRRR-YRRGYY 97
>UniRef50_A3BPB0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 238
Score = 72.9 bits (171), Expect = 7e-12
Identities = 36/79 (45%), Positives = 51/79 (64%), Gaps = 5/79 (6%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 95 GEKG-FEAAGVTGPGGEPV 112
G G +A VT PGG V
Sbjct: 59 GNDGRTKAVNVTAPGGRAV 77
>UniRef50_A7RV03 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 671
Score = 72.9 bits (171), Expect = 7e-12
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G+VKWFN+ G+GFI R+D EDVFVHQ+AI + RS+ +GE V+ + +KG
Sbjct: 484 TGSVKWFNLIKGFGFITRDDGGEDVFVHQSAIKAS----GYRSLEEGEHVQLTISNSDKG 539
Query: 99 FEAAGVTGPGGEPVKGS 115
A VT PGG VKG+
Sbjct: 540 KVAICVTSPGGGNVKGA 556
>UniRef50_A4RZ32 Cluster: Predicted protein; n=1; Ostreococcus
lucimarinus CCE9901|Rep: Predicted protein -
Ostreococcus lucimarinus CCE9901
Length = 106
Score = 70.9 bits (166), Expect = 3e-11
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
+A + G VKWFN G+GFI +D E++FVHQT I+ RSV +GE VE+ V
Sbjct: 1 MATRARGKVKWFNATKGFGFIIPHDGSEEIFVHQTGIS----CAGFRSVWEGEEVEYDVD 56
Query: 94 AGEKGFEAAGVTGPGGEPVKGSPYAADKRR 123
+ +A VTGP G VKG+P + R
Sbjct: 57 DTDFAPKAVNVTGPDGVAVKGAPRRRHRNR 86
>UniRef50_A4VMZ2 Cluster: Cold shock protein CspA; n=12;
Bacteria|Rep: Cold shock protein CspA - Pseudomonas
stutzeri (strain A1501)
Length = 136
Score = 69.3 bits (162), Expect = 9e-11
Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V+AE+ +GTVKWFN GYGFI R + DVFVH AI + RS+ +G+ VEF+V
Sbjct: 67 VMAERETGTVKWFNDAKGYGFIQRGN-GADVFVHYRAIRGDGH----RSLAEGQQVEFSV 121
Query: 93 VAGEKGFEAAGVTG 106
+ G+KG +A V G
Sbjct: 122 IQGQKGLQAEDVAG 135
>UniRef50_Q5CVY2 Cluster: Cold shock RNA binding domain of the OB
fold; n=2; Cryptosporidium|Rep: Cold shock RNA binding
domain of the OB fold - Cryptosporidium parvum Iowa II
Length = 135
Score = 67.3 bits (157), Expect = 4e-10
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
+SG KWF+ G+GFI +D ED+FVHQ +N + RS+ E VE+ + +K
Sbjct: 11 LSGVCKWFDSTKGFGFITPDDGSEDIFVHQ----QNIKVEGFRSLAQDERVEYEIETDDK 66
Query: 98 G-FEAAGVTGPGGEPVKGSPYAADKRRGYHR 127
G +A V+GP G PVKG D+RRG R
Sbjct: 67 GRRKAVNVSGPNGAPVKG-----DRRRGRGR 92
>UniRef50_O65639 Cluster: Glycine-rich protein; n=8;
Magnoliophyta|Rep: Glycine-rich protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 299
Score = 65.3 bits (152), Expect = 1e-09
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
A + +G V WFN GYGFI +D ++FVHQ++I + RS+ G+AVEFA+
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQ 63
Query: 95 GEKG-FEAAGVTGPGGEPVK 113
G G +A VT PGG +K
Sbjct: 64 GSDGKTKAVNVTAPGGGSLK 83
>UniRef50_Q1RLA8 Cluster: Zinc finger protein; n=1; Ciona
intestinalis|Rep: Zinc finger protein - Ciona
intestinalis (Transparent sea squirt)
Length = 193
Score = 65.3 bits (152), Expect = 1e-09
Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 40 GTVKWFNVKSGYGFINRNDT---KEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
G KWFN K GYGFI + + K DVFVHQ++I + RS+ +G+ V+F +
Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSI----DMEGFRSLQEGDRVKFWYKPSK 84
Query: 97 KGFEAAGVTGPGGEPVKGS 115
KG EA V GPGGE + G+
Sbjct: 85 KGLEAVKVVGPGGEKLVGA 103
>UniRef50_Q2LZN5 Cluster: GA14466-PA; n=3; Endopterygota|Rep:
GA14466-PA - Drosophila pseudoobscura (Fruit fly)
Length = 168
Score = 64.9 bits (151), Expect = 2e-09
Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 23 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIKMS----GFRSLGEQEEVEFECHRTARGL 78
Query: 100 EAAGVTGPGGEPVKGSPY 117
EA V+G G+ GS Y
Sbjct: 79 EATRVSGRAGDECHGSTY 96
>UniRef50_Q6ZN17 Cluster: Lin-28 homolog B; n=40; Coelomata|Rep:
Lin-28 homolog B - Homo sapiens (Human)
Length = 250
Score = 64.9 bits (151), Expect = 2e-09
Identities = 38/84 (45%), Positives = 47/84 (55%), Gaps = 11/84 (13%)
Query: 39 SGTVKWFNVKSGYGFI---NRN----DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFA 91
+G KWFNV+ G+GFI NR D DVFVHQ+ + + RS+ +GE VEF
Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFM----EGFRSLKEGEPVEFT 86
Query: 92 VVAGEKGFEAAGVTGPGGEPVKGS 115
KG E+ VTGPGG P GS
Sbjct: 87 FKKSSKGLESIRVTGPGGSPCLGS 110
>UniRef50_Q1QAP9 Cluster: Cold-shock DNA-binding domain protein;
n=5; cellular organisms|Rep: Cold-shock DNA-binding
domain protein - Psychrobacter cryohalolentis (strain
K5)
Length = 71
Score = 63.7 bits (148), Expect = 4e-09
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++ + G VKWFN G+GFI R D+ ED+FVH AI + RS+ DGE VEF+VV
Sbjct: 1 MSAREQGIVKWFNDSKGFGFIQR-DSGEDIFVHFRAIQGDG----YRSLKDGEKVEFSVV 55
Query: 94 AGEKGFEAAGV 104
G+KG +A V
Sbjct: 56 EGDKGLQAEEV 66
>UniRef50_P0A981 Cluster: Cold shock-like protein cspG; n=154;
Bacteria|Rep: Cold shock-like protein cspG - Shigella
flexneri
Length = 70
Score = 63.3 bits (147), Expect = 6e-09
Identities = 30/71 (42%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++ K++G VKWFN G+GFI +D +DVFVH TAI N R++ + + VEF++
Sbjct: 1 MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNE----FRTLNENQKVEFSIE 56
Query: 94 AGEKGFEAAGV 104
G++G AA V
Sbjct: 57 QGQRGPAAANV 67
>UniRef50_Q38896 Cluster: Glycine-rich protein 2b; n=26; cellular
organisms|Rep: Glycine-rich protein 2b - Arabidopsis
thaliana (Mouse-ear cress)
Length = 201
Score = 62.9 bits (146), Expect = 8e-09
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 95
++ GTVKWF+ + G+GFI +D +D+FVHQ++I + RS+ E+VEF V
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVD 68
Query: 96 EKGF-EAAGVTGPGGEPVKGS 115
G +A V+GP G PV+G+
Sbjct: 69 NSGRPKAIEVSGPDGAPVQGN 89
>UniRef50_Q1N1Z0 Cluster: Cold shock protein; n=14; Bacteria|Rep:
Cold shock protein - Oceanobacter sp. RED65
Length = 171
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G VKWFNVK G+GFI R D EDVFVH +I RS+ +G+ V+F+VV G+KG
Sbjct: 108 GLVKWFNVKKGFGFITR-DNGEDVFVHFRSIRGTGH----RSLSEGQNVKFSVVDGQKGL 162
Query: 100 EAAGVT 105
+A V+
Sbjct: 163 QAEDVS 168
>UniRef50_A5NZH6 Cluster: Putative cold-shock DNA-binding domain
protein precursor; n=1; Methylobacterium sp. 4-46|Rep:
Putative cold-shock DNA-binding domain protein precursor
- Methylobacterium sp. 4-46
Length = 242
Score = 62.5 bits (145), Expect = 1e-08
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
++SGTVKW++ G+GF++ D +DVFVH++A+A R + S+ +G+ V VV G+
Sbjct: 175 EMSGTVKWYDPAKGFGFVSVKDGGKDVFVHRSALA----RAGLDSLAEGQQVTMGVVEGQ 230
Query: 97 KGFEAAGVT 105
KG EA +T
Sbjct: 231 KGREAQSIT 239
Score = 37.9 bits (84), Expect = 0.25
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 41 TVKWFNVKSGYGFINRNDTKEDVFVHQTAI 70
TVKWFN + G+GF+ D D F+H A+
Sbjct: 65 TVKWFNKEKGFGFVELGDGSGDAFLHIRAV 94
>UniRef50_A5BWB0 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 189
Score = 62.5 bits (145), Expect = 1e-08
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
+++ +GTVKWF+ + G+GFI +D ED+FVHQT+I + R++ +GE VEFAV
Sbjct: 4 SKRSTGTVKWFSGQKGFGFIAPDDGGEDLFVHQTSIRSD----GFRTLSEGETVEFAVDH 59
Query: 95 GEKG-FEAAGVTGPGGEPVKG 114
GE G +A VT G G
Sbjct: 60 GEDGRTKAVEVTAVRGSYSSG 80
>UniRef50_P0A975 Cluster: Cold shock-like protein cspE; n=28;
Bacteria|Rep: Cold shock-like protein cspE - Shigella
flexneri
Length = 69
Score = 62.1 bits (144), Expect = 1e-08
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
K+ G VKWFN G+GFI D +DVFVH +AI N +++ +G+ VEF + G
Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTN----GFKTLAEGQRVEFEITNGA 58
Query: 97 KGFEAAGV 104
KG AA V
Sbjct: 59 KGPSAANV 66
>UniRef50_A0YCJ0 Cluster: Cold-shock DNA-binding protein; n=1;
marine gamma proteobacterium HTCC2143|Rep: Cold-shock
DNA-binding protein - marine gamma proteobacterium
HTCC2143
Length = 144
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 5/65 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFNV GYGF+ R + E++FVH +I+ N RK +R +G+ +EF+VV G+KG
Sbjct: 79 GTVKWFNVSKGYGFVTR-ASGEEIFVHFRSIS-GNGRKVLR---EGQKIEFSVVDGDKGP 133
Query: 100 EAAGV 104
+A V
Sbjct: 134 QAEDV 138
>UniRef50_Q9VRN5 Cluster: Lin-28 homolog; n=1; Drosophila
melanogaster|Rep: Lin-28 homolog - Drosophila
melanogaster (Fruit fly)
Length = 195
Score = 61.7 bits (143), Expect = 2e-08
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G KWFNV G+GF+ ND ++VFVHQ+ I + RS+G+ E VEF +G
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96
Query: 100 EAAGVTGPGGEPVKGSPY 117
EA V+ G +GS Y
Sbjct: 97 EATRVSSRHGGSCQGSTY 114
>UniRef50_UPI00015BD510 Cluster: UPI00015BD510 related cluster; n=1;
unknown|Rep: UPI00015BD510 UniRef100 entry - unknown
Length = 86
Score = 61.3 bits (142), Expect = 2e-08
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
++GTVKWF+ + GYGF+ R+D + DVFVH +AI N R+ +++ G+ VEF V K
Sbjct: 18 ITGTVKWFSKEKGYGFLTRDDNQGDVFVHFSAIDPN--RQGFKTLVQGQRVEFEVDQDSK 75
Query: 98 GFEAAGV 104
G A V
Sbjct: 76 GPRAKNV 82
>UniRef50_Q83RI9 Cluster: Cold shock-like protein cspC; n=38;
Gammaproteobacteria|Rep: Cold shock-like protein cspC -
Shigella flexneri
Length = 69
Score = 61.3 bits (142), Expect = 2e-08
Identities = 30/69 (43%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
K+ G VKWFN G+GFI D +DVFVH +AI N ++++ +G+ VEF + G+
Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGN----GLKTLAEGQNVEFEIQDGQ 58
Query: 97 KGFEAAGVT 105
KG A VT
Sbjct: 59 KGPAAVNVT 67
>UniRef50_Q016S2 Cluster: Putative nucleic acid binding protein;
n=1; Ostreococcus tauri|Rep: Putative nucleic acid
binding protein - Ostreococcus tauri
Length = 125
Score = 60.9 bits (141), Expect = 3e-08
Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK--AVRSVGDGEAVEFAV---VA 94
G VKWFN G+G+I +D + DVFVHQ+A+ R+ R G++VEF V
Sbjct: 13 GKVKWFNCTKGFGYITPDDGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDVEHESP 72
Query: 95 GEKGFEAAGVTGPGGEPVKGSPYA----ADKRRGYHRQ 128
++ +A VTG GG P+K P + K+RG R+
Sbjct: 73 TDERLKAVCVTGIGGAPLKAPPRTNYRRSSKKRGPRRE 110
>UniRef50_P39818 Cluster: Cold shock-like protein cspJ; n=7;
Bacteria|Rep: Cold shock-like protein cspJ - Salmonella
typhimurium
Length = 70
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
K++G VKWFN + G+GFI D +DVFVH +AI N R++ + + VEF+V G
Sbjct: 4 KITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNE----FRTLNENQEVEFSVEQGP 59
Query: 97 KGFEAAGV 104
KG A V
Sbjct: 60 KGPSAVNV 67
>UniRef50_P0A9Y2 Cluster: Cold shock protein cspA; n=39;
Gammaproteobacteria|Rep: Cold shock protein cspA -
Salmonella typhimurium
Length = 70
Score = 60.1 bits (139), Expect = 5e-08
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
K++G VKWFN G+GFI +D +DVFVH +AI + +S+ +G+ V F + +G
Sbjct: 4 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQND----GYKSLDEGQKVSFTIESGA 59
Query: 97 KGFEAAGVT 105
KG A VT
Sbjct: 60 KGPAAGNVT 68
>UniRef50_Q1ZKE8 Cluster: Cold shock protein; n=3;
Gammaproteobacteria|Rep: Cold shock protein - Vibrio
angustum S14
Length = 68
Score = 59.7 bits (138), Expect = 7e-08
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
K++GTVKWFN G+GFI+ D K DVFVH +AI R+ +R +G++VEF V G+
Sbjct: 3 KLTGTVKWFNDDKGFGFISGTDGK-DVFVHFSAIQAQG-RRTLR---EGQSVEFIVTDGQ 57
Query: 97 KGFEAAGV 104
KG +A+ V
Sbjct: 58 KGPQASEV 65
>UniRef50_Q74BX3 Cluster: Cold shock domain family protein; n=13;
cellular organisms|Rep: Cold shock domain family protein
- Geobacter sulfurreducens
Length = 66
Score = 59.3 bits (137), Expect = 1e-07
Identities = 32/65 (49%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G VKWFN G+GFI + D EDVFVH +AI ++ +S+ +GE V F VV G KG
Sbjct: 4 GRVKWFNDAKGFGFIEQ-DNGEDVFVHFSAIQQDG----FKSLAEGEQVSFDVVNGPKGL 58
Query: 100 EAAGV 104
+AA V
Sbjct: 59 QAANV 63
>UniRef50_A4BC11 Cluster: Cold shock protein; n=1; Reinekea sp.
MED297|Rep: Cold shock protein - Reinekea sp. MED297
Length = 153
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/70 (44%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 95
++ G VKWFNV G+GF+ R D EDVFVH +I + RS+ +G+ V F VV
Sbjct: 84 DREEGLVKWFNVSKGFGFVTR-DNGEDVFVHFRSIR----GRGHRSLQEGQRVRFGVVES 138
Query: 96 EKGFEAAGVT 105
KG +A VT
Sbjct: 139 SKGLQAEDVT 148
>UniRef50_Q013V8 Cluster: Glycogen debranching enzyme; n=1;
Ostreococcus tauri|Rep: Glycogen debranching enzyme -
Ostreococcus tauri
Length = 141
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKA--VRSVGDGEAVEFAVVAGEKGF 99
V WFN GYG++ +D EDVFVHQ+ + + R VR G+ +EF + E+
Sbjct: 44 VTWFNCVRGYGYVRPHDGSEDVFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDERR- 102
Query: 100 EAAGVTGPGGEPVKGSP 116
A VTGP G P+K +P
Sbjct: 103 RAKNVTGPAGAPLKKTP 119
>UniRef50_Q4UBG6 Cluster: Cold shock protein, putative; n=2;
Theileria|Rep: Cold shock protein, putative - Theileria
annulata
Length = 95
Score = 58.8 bits (136), Expect = 1e-07
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
+++G KWFN K GYGFI + EDVFVHQ+ I + RS+ + E VE V+
Sbjct: 3 RLNGVCKWFNNKKGYGFITL-ENGEDVFVHQSEIYAD----GFRSLHENEKVELEVIMDN 57
Query: 97 KGFEAAGVTGPGGEPVKGS 115
+A VTGP G V G+
Sbjct: 58 NRKKAIHVTGPNGTHVTGT 76
>UniRef50_P62169 Cluster: Cold shock-like protein cspC; n=26;
cellular organisms|Rep: Cold shock-like protein cspC -
Bacillus anthracis
Length = 65
Score = 58.8 bits (136), Expect = 1e-07
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 5/67 (7%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
+ G VKWFN + G+GFI R D +DVFVH +AI ++ +S+ +G+ VEF +V G +
Sbjct: 1 MQGRVKWFNAEKGFGFIERED-GDDVFVHFSAIQQD----GYKSLEEGQQVEFDIVDGAR 55
Query: 98 GFEAAGV 104
G +AA V
Sbjct: 56 GPQAANV 62
>UniRef50_P0A363 Cluster: Cold shock-like protein cspB; n=367;
root|Rep: Cold shock-like protein cspB - Yersinia
enterocolitica
Length = 70
Score = 58.8 bits (136), Expect = 1e-07
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++ K++G VKWF+ G+GFI+ D +DVFVH +AI N+ +++ +G+ VEF++
Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGND----YKTLDEGQNVEFSIE 56
Query: 94 AGEKGFEAAGV 104
G+KG A V
Sbjct: 57 QGQKGPSAVNV 67
>UniRef50_Q08VT0 Cluster: Conserved domain protein; n=2;
Bacteria|Rep: Conserved domain protein - Stigmatella
aurantiaca DW4/3-1
Length = 100
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWFN G+GFI ++ EDVF H TAI + R++ +G+ V+F V G KG
Sbjct: 36 TGTVKWFNDAKGFGFITQDGGGEDVFCHHTAINMD----GFRTLQEGQKVQFDVARGPKG 91
Query: 99 FEAAGV 104
+A V
Sbjct: 92 LQAQNV 97
>UniRef50_P72366 Cluster: Cold shock-like protein cspA; n=29;
Bacteria|Rep: Cold shock-like protein cspA - Stigmatella
aurantiaca
Length = 68
Score = 58.4 bits (135), Expect = 2e-07
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWFN G+GFI ++ EDVF H +AI + R++ +G+ VEF V G KG
Sbjct: 3 TGTVKWFNDAKGFGFITQDGGGEDVFCHHSAINMD----GFRTLQEGQKVEFEVTRGPKG 58
Query: 99 FEAAGV 104
+A V
Sbjct: 59 LQAQNV 64
>UniRef50_Q2J4H7 Cluster: Cold-shock DNA-binding domain protein;
n=13; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Frankia sp. (strain CcI3)
Length = 67
Score = 58.0 bits (134), Expect = 2e-07
Identities = 27/65 (41%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN + G+GFI+ + DVFVH ++I + +S+ +G++V+F +V G+KG
Sbjct: 4 GTVKWFNAEKGFGFISVDGGGPDVFVHYSSIVAD----GYKSLDEGQSVQFEIVQGQKGP 59
Query: 100 EAAGV 104
+A V
Sbjct: 60 QADNV 64
>UniRef50_Q9ZFK9 Cluster: CspA; n=25; Bacteria|Rep: CspA -
Myxococcus xanthus
Length = 68
Score = 58.0 bits (134), Expect = 2e-07
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWFN G+GFI ++D DVF H TAI + R++ +G+ VEF G KG
Sbjct: 3 TGTVKWFNDAKGFGFIAQDDGGADVFCHHTAIQTD----GFRTLAEGQKVEFETRKGPKG 58
Query: 99 FEAAGV 104
+A V
Sbjct: 59 LQAENV 64
>UniRef50_Q9ZFK8 Cluster: CspB; n=4; cellular organisms|Rep: CspB -
Myxococcus xanthus
Length = 66
Score = 57.6 bits (133), Expect = 3e-07
Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN G+GFI D EDVF H TAI + R++ +G+ VEF V G KG
Sbjct: 4 GTVKWFNDAKGFGFI-AQDNGEDVFCHHTAINMD----GFRTLQEGQQVEFEVTRGPKGL 58
Query: 100 EAAGV 104
+A V
Sbjct: 59 QAQNV 63
>UniRef50_A5ZXC4 Cluster: Putative uncharacterized protein; n=2;
cellular organisms|Rep: Putative uncharacterized protein
- Ruminococcus obeum ATCC 29174
Length = 66
Score = 57.6 bits (133), Expect = 3e-07
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN + GYGFI D DVFVH +AI N + +S+ +G+AV + + G +G
Sbjct: 4 GTVKWFNAEKGYGFITGED-GADVFVHFSAI--NG--EGFKSLDEGQAVTYDLTEGARGM 58
Query: 100 EAAGVT 105
+AA VT
Sbjct: 59 QAANVT 64
>UniRef50_A1CFX7 Cluster: Cold shock NA binding domain protein; n=2;
cellular organisms|Rep: Cold shock NA binding domain
protein - Aspergillus clavatus
Length = 125
Score = 57.6 bits (133), Expect = 3e-07
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 95
E+ +GTVKWFN + GYGFI +T ED+FVH A+ N +S+ +G+ V F V G
Sbjct: 58 ERQNGTVKWFNDEKGYGFIT-PETGEDLFVHFRAVEGN----GFKSLKEGQKVTFEAVQG 112
Query: 96 EKGFEA 101
+KG +A
Sbjct: 113 QKGRQA 118
>UniRef50_Q2BKV8 Cluster: Cold-shock domain family protein; n=3;
Bacteria|Rep: Cold-shock domain family protein -
Neptuniibacter caesariensis
Length = 149
Score = 57.2 bits (132), Expect = 4e-07
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 95
++ GTVKWFNV G+GFI R + +DVFVH RN + RS+ +G+ V F V
Sbjct: 81 DREQGTVKWFNVSKGFGFITRGE-DDDVFVH----FRNIRGRGHRSLAEGQKVRFYVRES 135
Query: 96 EKGFEAAGVT 105
+KG +A V+
Sbjct: 136 DKGLQAEDVS 145
>UniRef50_Q2JGE4 Cluster: Cold-shock DNA-binding domain protein;
n=9; Bacteria|Rep: Cold-shock DNA-binding domain protein
- Frankia sp. (strain CcI3)
Length = 67
Score = 56.0 bits (129), Expect = 9e-07
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN + G+GFI+ + DVFVH +AI + +++ +G+ VEF V G+KG
Sbjct: 4 GTVKWFNSEKGFGFISVDGGGSDVFVHYSAIQMD----GYKALEEGQRVEFQVTQGQKGP 59
Query: 100 EAAGV 104
+A V
Sbjct: 60 QADAV 64
>UniRef50_P54584 Cluster: Cold shock protein; n=6; Bacteria|Rep:
Cold shock protein - Arthrobacter globiformis
Length = 67
Score = 56.0 bits (129), Expect = 9e-07
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN + G+GFI +D+ DVFVH + I +++ + V+F + G KG
Sbjct: 4 GTVKWFNAEKGFGFITPDDSDGDVFVHYSEIQTG----GFKTLDENARVQFEIGQGAKGP 59
Query: 100 EAAGVT 105
+A GVT
Sbjct: 60 QATGVT 65
>UniRef50_P39158 Cluster: Cold shock protein cspC; n=41;
Bacteria|Rep: Cold shock protein cspC - Bacillus
subtilis
Length = 66
Score = 56.0 bits (129), Expect = 9e-07
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN + G+GFI R + +DVFVH +AI + +S+ +G+ V F V G +G
Sbjct: 4 GTVKWFNAEKGFGFIER-ENGDDVFVHFSAIQSD----GFKSLDEGQKVSFDVEQGARGA 58
Query: 100 EAAGV 104
+AA V
Sbjct: 59 QAANV 63
>UniRef50_Q9S1B7 Cluster: Cold shock-like protein cspA; n=10;
Bacteria|Rep: Cold shock-like protein cspA - Shewanella
violacea
Length = 70
Score = 56.0 bits (129), Expect = 9e-07
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
+++ +GTVKWFN G+GF+ +++ DVFVH AIA + +++ +G+ V F V
Sbjct: 1 MSDSNTGTVKWFNEDKGFGFLTQDNGGADVFVHFRAIA----SEGFKTLDEGQKVTFEVE 56
Query: 94 AGEKGFEAAGV 104
G KG +A+ V
Sbjct: 57 QGPKGLQASNV 67
>UniRef50_UPI0000589074 Cluster: PREDICTED: similar to
ENSANGP00000011455; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000011455
- Strongylocentrotus purpuratus
Length = 234
Score = 55.6 bits (128), Expect = 1e-06
Identities = 33/80 (41%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 95
E G KWF++ YGF+ +D DVFVHQ I RS+ E VE+
Sbjct: 61 ELYRGKCKWFSLAKCYGFLTPDDGSGDVFVHQRVI----KMVGYRSLDTNEEVEYKFQFS 116
Query: 96 EKGFEAAGVTGPGGEPVKGS 115
EKG EA VTG G KGS
Sbjct: 117 EKGREATTVTGVDGGDCKGS 136
>UniRef50_P92186 Cluster: Protein lin-28; n=5; Caenorhabditis|Rep:
Protein lin-28 - Caenorhabditis elegans
Length = 227
Score = 55.6 bits (128), Expect = 1e-06
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 97
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 98 GFEAAGVTGP-GGEPVKGS 115
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>UniRef50_Q9KXN2 Cluster: Cold shock protein B; n=7; Bacteria|Rep:
Cold shock protein B - Streptomyces coelicolor
Length = 127
Score = 55.2 bits (127), Expect = 2e-06
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 6/63 (9%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G VKWFN + G+GF++R+D DVFVH + + V S+ G+ VEF VVAG++G
Sbjct: 3 TGKVKWFNSEKGFGFLSRDD-GGDVFVHSSVLP-----AGVESLKPGQRVEFGVVAGQRG 56
Query: 99 FEA 101
+A
Sbjct: 57 DQA 59
>UniRef50_Q87NH9 Cluster: Cold shock transcriptional regulator CspA;
n=21; Bacteria|Rep: Cold shock transcriptional regulator
CspA - Vibrio parahaemolyticus
Length = 70
Score = 55.2 bits (127), Expect = 2e-06
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++ K +G+VKWFN G+GFI+ + ED+FVH +I +++ +G+ V + V
Sbjct: 1 MSNKSTGSVKWFNETKGFGFISPENGGEDLFVHFQSIVST----GFKTLSEGQKVSYVVE 56
Query: 94 AGEKGFEAAGVT 105
G+KG +A VT
Sbjct: 57 QGKKGLQAGEVT 68
>UniRef50_P72188 Cluster: Cold shock protein capA; n=23;
Proteobacteria|Rep: Cold shock protein capA -
Pseudomonas fragi
Length = 64
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++++ SGTVKWFN + G+GFI +D+FVH AI + +S+ +G+ V F
Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESD----GFKSLKEGQTVSFVAE 56
Query: 94 AGEKGFEA 101
G+KG +A
Sbjct: 57 KGQKGMQA 64
>UniRef50_Q9PA96 Cluster: Temperature acclimation protein B; n=24;
Bacteria|Rep: Temperature acclimation protein B -
Xylella fastidiosa
Length = 85
Score = 54.4 bits (125), Expect = 3e-06
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN G+GFI N+ D+FVH AI N +S+ +G+ V F V G+KG
Sbjct: 23 GTVKWFNDNKGFGFITSNN-GPDLFVHYRAIQGN----GFKSLQEGQKVSFVAVQGQKGM 77
Query: 100 EA 101
+A
Sbjct: 78 QA 79
>UniRef50_Q5JKD6 Cluster: Cold shock domain protein 2-like protein;
n=3; Oryza sativa|Rep: Cold shock domain protein 2-like
protein - Oryza sativa subsp. japonica (Rice)
Length = 221
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
+++E+V G VK F+ +G+ FI +D ED+F+HQ+++ + RS+ D + +E +V
Sbjct: 1 MVSERVKGMVKGFDATNGFSFITPDDGSEDLFIHQSSLKFD----GYRSLNDDDVIELSV 56
Query: 93 VAGEKG-FEAAGVTGPGGEPVKG 114
+ + G +A VT PG + G
Sbjct: 57 GSSDDGRTKAVDVTAPGSDAHTG 79
>UniRef50_Q834D5 Cluster: Cold-shock domain family protein; n=1;
Enterococcus faecalis|Rep: Cold-shock domain family
protein - Enterococcus faecalis (Streptococcus faecalis)
Length = 68
Score = 53.2 bits (122), Expect = 6e-06
Identities = 26/65 (40%), Positives = 43/65 (66%), Gaps = 5/65 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G VKWF+ + GYGFI N+ ++++FVH TAI + +S+ + ++VEF ++ G +G
Sbjct: 4 GIVKWFDNRKGYGFIVYNE-EDEIFVHFTAIEGD----GFKSLDENQSVEFEIMEGNRGL 58
Query: 100 EAAGV 104
+AA V
Sbjct: 59 QAAHV 63
>UniRef50_Q2S0T4 Cluster: Conserved domain protein; n=2;
Bacteroidetes/Chlorobi group|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 110
Score = 53.2 bits (122), Expect = 6e-06
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+ TVKWF+ K GYGFI+ D EDVFVH + I ++ K ++S + V F + G KG
Sbjct: 3 TSTVKWFDAKKGYGFIHHPDDGEDVFVHYSNIQSDDDFKTLKS---DQHVRFEMNDGPKG 59
Query: 99 FEAAGV 104
A V
Sbjct: 60 LHALEV 65
>UniRef50_Q8GI47 Cluster: Cold shock protein homolog; n=5;
Deinococci|Rep: Cold shock protein homolog - Thermus
thermophilus
Length = 73
Score = 53.2 bits (122), Expect = 6e-06
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE--K 97
G VKWFN + GYGFI R + DVFVH TAI K R++ +G+ V F V G K
Sbjct: 4 GRVKWFNAEKGYGFIER-EGDTDVFVHYTAI----NAKGFRTLNEGDIVTFDVEPGRNGK 58
Query: 98 GFEAAGVT 105
G +A VT
Sbjct: 59 GPQAVNVT 66
>UniRef50_Q8D046 Cluster: Cold shock protein; n=14;
Enterobacteriaceae|Rep: Cold shock protein - Yersinia
pestis
Length = 77
Score = 53.2 bits (122), Expect = 6e-06
Identities = 30/65 (46%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G VKWFN GYGFI+ +D DV+V++TAIA N K S+ +G+ VEF+ G
Sbjct: 14 GRVKWFNQSEGYGFISPHDGGSDVYVNKTAIA-NTKNK---SLNEGQDVEFSTYRSIHGP 69
Query: 100 EAAGV 104
AA V
Sbjct: 70 SAADV 74
>UniRef50_Q0BPU3 Cluster: Cold shock protein; n=1; Granulibacter
bethesdensis CGDNIH1|Rep: Cold shock protein -
Granulobacter bethesdensis (strain ATCC BAA-1260 /
CGDNIH1)
Length = 100
Score = 53.2 bits (122), Expect = 6e-06
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN GYGFI + ++DVFVH +A+ R +RS+ +G+ ++F + + G
Sbjct: 35 GTVKWFNPTKGYGFIAPSTGEKDVFVHISAV----QRAGLRSLNEGQQLDFEIEQQQNGR 90
Query: 100 EAA 102
AA
Sbjct: 91 AAA 93
>UniRef50_Q9ZBH4 Cluster: Putative DNA-binding protein; n=2;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces coelicolor
Length = 162
Score = 52.8 bits (121), Expect = 8e-06
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
V+G V F+ GYGFI D EDVF+H + P ++VRS G VEF V +GE+
Sbjct: 22 VAGRVVRFDGTRGYGFIAPEDGGEDVFLHVNDLLI--PEESVRS---GLVVEFEVESGER 76
Query: 98 GFEAAGVTGPGGE 110
G +A+G+ P GE
Sbjct: 77 GLKASGIRLPEGE 89
>UniRef50_Q6FAY9 Cluster: Cold shock-like protein; n=44;
Bacteria|Rep: Cold shock-like protein - Acinetobacter
sp. (strain ADP1)
Length = 69
Score = 52.8 bits (121), Expect = 8e-06
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++ V+GTVKWFN G+GFI + D+ DVF H IA + +++ +G+ V F +V
Sbjct: 1 MSNSVNGTVKWFNEVKGFGFI-QQDSGPDVFAHFKEIASS----GFKTLYEGQRVSFGIV 55
Query: 94 AGEKGFEAAGV 104
G+KG A +
Sbjct: 56 DGQKGPSAVNI 66
>UniRef50_Q9Z3S6 Cluster: Cold shock protein cspA; n=59;
Alphaproteobacteria|Rep: Cold shock protein cspA -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 69
Score = 52.8 bits (121), Expect = 8e-06
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
SGTVKWFN G+GFI +D DVFVH +A+ R +RS+ +G+ V + +V K
Sbjct: 3 SGTVKWFNSTKGFGFIQPDDGATDVFVHASAV----ERAGMRSLVEGQKVTYDIVRDTK 57
>UniRef50_Q60AQ4 Cluster: Cold shock protein; n=27; Bacteria|Rep:
Cold shock protein - Methylococcus capsulatus
Length = 69
Score = 52.4 bits (120), Expect = 1e-05
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 5/71 (7%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++++ GTVKWFN G+GFI R + D+FVH R+ + +++ +G+ V F V
Sbjct: 1 MSQQQQGTVKWFNESKGFGFIQR-ENGSDLFVH----FRSIQGQGFKTLKEGQRVSFTEV 55
Query: 94 AGEKGFEAAGV 104
AG+KG +A V
Sbjct: 56 AGQKGPQAENV 66
>UniRef50_A7DA86 Cluster: Putative cold-shock DNA-binding domain
protein; n=3; Methylobacterium extorquens PA1|Rep:
Putative cold-shock DNA-binding domain protein -
Methylobacterium extorquens PA1
Length = 69
Score = 52.4 bits (120), Expect = 1e-05
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK- 97
+GTVKWFN GYGFI ++ +DVFVH +A+ R +R + +G+ V + V K
Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGKDVFVHISAV----ERAGLRDLAEGQKVTYEVEIDRKS 58
Query: 98 GFEAAG 103
G E+AG
Sbjct: 59 GKESAG 64
>UniRef50_A3Y9L0 Cluster: Cold-shock DNA-binding domain protein;
n=2; Marinomonas|Rep: Cold-shock DNA-binding domain
protein - Marinomonas sp. MED121
Length = 97
Score = 52.4 bits (120), Expect = 1e-05
Identities = 31/68 (45%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
VSG VKWFN + G+GFI R + DVFVH AI N + R++ +G+ V F V G+K
Sbjct: 33 VSGIVKWFNDEKGFGFIER-EGGPDVFVHFRAI--NGTGR--RTLQEGQKVTFEVTQGQK 87
Query: 98 GFEAAGVT 105
G +A V+
Sbjct: 88 GPQAENVS 95
>UniRef50_Q9I0L6 Cluster: Cold-shock protein CspD; n=12;
Gammaproteobacteria|Rep: Cold-shock protein CspD -
Pseudomonas aeruginosa
Length = 90
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
+SG VKWFN GYGFI ED+F H +AI + +++ G+ V F ++ G K
Sbjct: 2 LSGKVKWFNNAKGYGFILAEGRDEDLFAHYSAIQMD----GYKTLKAGQPVNFEIIQGPK 57
Query: 98 GFEAAGVT 105
G A ++
Sbjct: 58 GLHAINIS 65
>UniRef50_Q835L0 Cluster: Cold-shock domain family protein; n=24;
Bacteria|Rep: Cold-shock domain family protein -
Enterococcus faecalis (Streptococcus faecalis)
Length = 66
Score = 52.0 bits (119), Expect = 1e-05
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWFN G+GFI + DVFVH +AI + +++ +G+AV F + G++G
Sbjct: 3 TGTVKWFNSDKGFGFITA-ENGNDVFVHFSAIQGD----GFKTLEEGQAVTFEIEEGQRG 57
Query: 99 FEAAGVT 105
+A VT
Sbjct: 58 PQATNVT 64
>UniRef50_Q4JMV8 Cluster: Predicted cold shock family protein; n=1;
uncultured bacterium BAC17H8|Rep: Predicted cold shock
family protein - uncultured bacterium BAC17H8
Length = 83
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN + GYGFIN ++ DVFVH TA+ + + + +G+ V + + G
Sbjct: 18 GTVKWFNTQKGYGFINPDEDGNDVFVHITAVQNS----GLTGLNEGQRVSYELAEQRNGR 73
Query: 100 EAA 102
AA
Sbjct: 74 FAA 76
>UniRef50_A4LXQ2 Cluster: Cold-shock DNA-binding domain protein;
n=1; Geobacter bemidjiensis Bem|Rep: Cold-shock
DNA-binding domain protein - Geobacter bemidjiensis Bem
Length = 92
Score = 52.0 bits (119), Expect = 1e-05
Identities = 32/71 (45%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 36 EKV--SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
EKV +G VKWFN G+GFI + D DVFVH ++I + +S+ +G++V F VV
Sbjct: 24 EKVMANGVVKWFNDAKGFGFIEQ-DNGVDVFVHFSSIQGD----GFKSLVEGDSVTFDVV 78
Query: 94 AGEKGFEAAGV 104
G KG +AA V
Sbjct: 79 QGAKGPQAANV 89
>UniRef50_Q8G880 Cluster: Cold shock protein; n=3;
Bifidobacterium|Rep: Cold shock protein -
Bifidobacterium longum
Length = 79
Score = 51.6 bits (118), Expect = 2e-05
Identities = 25/65 (38%), Positives = 36/65 (55%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVK+F K G+GFI +D EDVFVH I + + + +G+ VE+ + KG
Sbjct: 4 GTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSGKGT 63
Query: 100 EAAGV 104
+A V
Sbjct: 64 QAKDV 68
>UniRef50_Q1GQL9 Cluster: Cold-shock DNA-binding domain protein;
n=30; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 249
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 95
E+ SGTVK+FN G+GFI R+D + D FVH +A+ R + + +G+ V F +
Sbjct: 179 ERTSGTVKFFNTTKGFGFIARDDGQADAFVHISAV----QRAGMAGLEEGDRVAFDIEVD 234
Query: 96 EKGFEAA 102
++G AA
Sbjct: 235 DRGKFAA 241
Score = 46.4 bits (105), Expect = 7e-04
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVK+FN G+GF+ R+D EDVFVH +A+ + ++ + G+ + F +V G
Sbjct: 86 GTVKFFNPSKGFGFVARDDGGEDVFVHISAV----EQAGLQGLASGQPLAFTLVE-RNGK 140
Query: 100 EAAGVTGPGGEPVKGSPYAADKR 122
+A GEP+ +A +R
Sbjct: 141 VSAIDLKIEGEPMPVEEFAPRQR 163
>UniRef50_Q1FKR2 Cluster: Cold-shock protein, DNA-binding; n=2;
Clostridium|Rep: Cold-shock protein, DNA-binding -
Clostridium phytofermentans ISDg
Length = 70
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKW++ + GYGF++ ND + DVF+H + I K V +GE++ F ++ EKG
Sbjct: 5 TGTVKWYDSERGYGFVSTNDGR-DVFLHHSQIKEKGFDKEVH---EGESIGFDIIEQEKG 60
Query: 99 FEAAGV 104
A V
Sbjct: 61 PAAINV 66
>UniRef50_Q0SKK0 Cluster: Cold shock protein; n=20; Bacteria|Rep:
Cold shock protein - Rhodococcus sp. (strain RHA1)
Length = 119
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTV+WFN + G+GF+ D +D+FVH + IA + R + +G+ V FAV E G
Sbjct: 55 TGTVRWFNAEQGFGFLAPADGSDDIFVHVSEIAGDGH----RILEEGQRVSFAVCRTETG 110
Query: 99 FEAAGV 104
+A V
Sbjct: 111 DQARDV 116
>UniRef50_Q7D268 Cluster: AGR_C_161p; n=7; Proteobacteria|Rep:
AGR_C_161p - Agrobacterium tumefaciens (strain C58 /
ATCC 33970)
Length = 163
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK- 97
+GTVKWFN GYGFI +D +DVFVH +A+ R + ++ DG+ + + ++ +
Sbjct: 97 TGTVKWFNATKGYGFIQPDDGSQDVFVHISAV----ERAGLTALNDGQKLSYELMQDRRS 152
Query: 98 GFEAAG 103
G +AG
Sbjct: 153 GKMSAG 158
>UniRef50_Q6N3M1 Cluster: Cold shock DNA binding protein; n=78;
Bacteria|Rep: Cold shock DNA binding protein -
Rhodopseudomonas palustris
Length = 84
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
GTVKWFN GYGFI +D DVFVH +A+ R + ++ +G+ + + +VA +
Sbjct: 18 GTVKWFNATKGYGFIQPDDGGNDVFVHISAV----ERAGLGTLREGQKISYEIVADRR 71
>UniRef50_A6E2L2 Cluster: Cold-shock DNA-binding domain protein;
n=19; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Roseovarius sp. TM1035
Length = 68
Score = 50.4 bits (115), Expect = 4e-05
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWFN G+GFI ++ +DVFVH +A+ R + + D + V F + +G G
Sbjct: 3 NGTVKWFNSTKGFGFIAPDNGGKDVFVHISAV----ERAGLTGLADNQKVTFDIESGRDG 58
Query: 99 FEAA 102
E+A
Sbjct: 59 RESA 62
>UniRef50_A3YF52 Cluster: Cold-shock protein, DNA-binding; n=2;
Marinomonas|Rep: Cold-shock protein, DNA-binding -
Marinomonas sp. MED121
Length = 79
Score = 50.4 bits (115), Expect = 4e-05
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
+ +K+ GTVKWFN G GFI R D + DVFVH +I + +++ G+AV F +
Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQR-DNEADVFVHYKSIV----SEGHKTLKKGQAVSFFIT 55
Query: 94 AGEKGFEAAGV 104
+ G +A+ V
Sbjct: 56 ENDFGRQASEV 66
>UniRef50_Q48H64 Cluster: Cold shock domain protein CspD; n=7;
Proteobacteria|Rep: Cold shock domain protein CspD -
Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6)
Length = 94
Score = 50.0 bits (114), Expect = 6e-05
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 38 VSGTVKWFNVKSGYGFINRN-DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
++G VKWFN GYGFI ++ +D+F H + I + +++ G+ V F ++ G
Sbjct: 4 LNGKVKWFNNAKGYGFIIKDGKPDDDLFAHFSTI----QMEGYKTLKAGQPVSFEIIQGP 59
Query: 97 KGFEAAGVT---GPGGEPVKGSPYAADKRRGYH 126
KG A + GEPVK +AA + H
Sbjct: 60 KGLHAVNIAPLLAKAGEPVK-ETHAASEHEPEH 91
>UniRef50_Q4F6X8 Cluster: Cold shock protein; n=6;
Gammaproteobacteria|Rep: Cold shock protein -
Pseudomonas fluorescens
Length = 69
Score = 50.0 bits (114), Expect = 6e-05
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++ + +GTVKWFN + G+GFI +D+FVH +S+ +G+ V F VV
Sbjct: 1 MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFPF-----QGTGFKSLQEGQKVSFVVV 55
Query: 94 AGEKGFEA 101
G+KG +A
Sbjct: 56 NGQKGLQA 63
>UniRef50_A0YBV1 Cluster: CspA-like protein; n=17;
Proteobacteria|Rep: CspA-like protein - marine gamma
proteobacterium HTCC2143
Length = 91
Score = 49.6 bits (113), Expect = 8e-05
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWFN G+GFI DVF H + I+ + +++ G+ V F V G KG
Sbjct: 3 TGTVKWFNNAKGFGFILPEGGGADVFAHYSTISMD----GYKTLKAGQPVSFDTVNGPKG 58
Query: 99 FEAAGVTGPGGEPVKGSPYAADKRR 123
A + +P A D R
Sbjct: 59 LHATNIQAAQDSADNSNPRAVDDIR 83
>UniRef50_Q9AN51 Cluster: ID534; n=52; Bacteria|Rep: ID534 -
Bradyrhizobium japonicum
Length = 120
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN GYGF+ +D +DVFVH +A+ + S+ +G V + +V G
Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGKDVFVHISAV----EKAGYTSLVEGAKVGYELVTNRSGK 111
Query: 100 EAA 102
+AA
Sbjct: 112 QAA 114
>UniRef50_Q2RQP4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 70
Score = 49.2 bits (112), Expect = 1e-04
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPR 76
+GTVKWFNV+ G+GFI +D D FVH +A+ R++ R
Sbjct: 3 TGTVKWFNVQKGFGFIAPDDGGSDAFVHISAVERSSDR 40
>UniRef50_Q28L70 Cluster: Cold-shock DNA-binding domain protein;
n=11; Bacteria|Rep: Cold-shock DNA-binding domain
protein - Jannaschia sp. (strain CCS1)
Length = 68
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWFN G+GFI +DVFVH +A+ R+ + + D + V + + AG G
Sbjct: 3 NGTVKWFNSTKGFGFIAPETGGKDVFVHISAVERS----GLTGLADNQKVTYDLEAGRDG 58
Query: 99 FEAA 102
E+A
Sbjct: 59 RESA 62
>UniRef50_A3YG84 Cluster: Cold-shock protein CspD; n=1; Marinomonas
sp. MED121|Rep: Cold-shock protein CspD - Marinomonas
sp. MED121
Length = 92
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN GYGFI +ED+F+H ++I + +++ G++V F G++G
Sbjct: 4 GTVKWFNNAKGYGFIVSESFEEDLFIHYSSILID----GYKTLKAGQSVSFKTSPGKQGL 59
Query: 100 EAAGV 104
A +
Sbjct: 60 HAVDI 64
>UniRef50_A3J3Q2 Cluster: Cold shock protein; n=7;
Flavobacteriales|Rep: Cold shock protein - Flavobacteria
bacterium BAL38
Length = 66
Score = 48.4 bits (110), Expect = 2e-04
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G VK+FN GYGFI ++T +D+FVH + + V S+ +G+AV + G KG
Sbjct: 3 TGKVKFFNESKGYGFITDDETGKDIFVHASGM-------RVESLNEGDAVSYEEEEGRKG 55
Query: 99 FEAAGV 104
AA V
Sbjct: 56 KVAAQV 61
>UniRef50_Q82ZV8 Cluster: Cold-shock domain family protein; n=7;
cellular organisms|Rep: Cold-shock domain family protein
- Enterococcus faecalis (Streptococcus faecalis)
Length = 67
Score = 48.0 bits (109), Expect = 2e-04
Identities = 30/67 (44%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVK FN K GYGFI D E +FVHQT I RK + +G+AVE+ E
Sbjct: 3 TGTVKSFNHKRGYGFIIAEDGSE-IFVHQTGICMPGFRKLL----EGQAVEYETAEYEGR 57
Query: 99 FEAAGVT 105
+A VT
Sbjct: 58 TKAVNVT 64
>UniRef50_Q1B3F5 Cluster: Cold-shock DNA-binding domain protein;
n=13; Actinomycetales|Rep: Cold-shock DNA-binding domain
protein - Mycobacterium sp. (strain MCS)
Length = 147
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G VKW++ + G+GF+++ D EDV+V +A+ V + G+ VEF V AG +G
Sbjct: 14 TGRVKWYDAEKGFGFLSQED-GEDVYVRSSALP-----AGVEGLKAGQRVEFGVAAGRRG 67
Query: 99 FEAAGVT 105
+A +T
Sbjct: 68 PQALSLT 74
>UniRef50_Q11D48 Cluster: Cold-shock DNA-binding domain protein;
n=11; Proteobacteria|Rep: Cold-shock DNA-binding domain
protein - Mesorhizobium sp. (strain BNC1)
Length = 69
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVK+FN G+GFI +D DVFVH +A+ R +R++ +G+ + F VV +
Sbjct: 4 GTVKFFNATKGFGFIQPDDGAADVFVHISAV----ERAGMRTIVEGQKLSFDVVRDNRSG 59
Query: 100 EAA 102
++A
Sbjct: 60 KSA 62
>UniRef50_A0Z255 Cluster: Cold shock protein, CspA family-like
protein; n=1; marine gamma proteobacterium HTCC2080|Rep:
Cold shock protein, CspA family-like protein - marine
gamma proteobacterium HTCC2080
Length = 138
Score = 48.0 bits (109), Expect = 2e-04
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G +KWFN G+GFI +D E VFVH RN RS+ G+ V ++V A ++G
Sbjct: 76 GNIKWFNATKGFGFIVGDDGAE-VFVHY----RNVEGLTKRSIKQGQRVAYSVRASDRGP 130
Query: 100 EAAGV 104
+A GV
Sbjct: 131 QAEGV 135
>UniRef50_Q2S3Y3 Cluster: 'Cold-shock' DNA-binding domain, putative;
n=1; Salinibacter ruber DSM 13855|Rep: 'Cold-shock'
DNA-binding domain, putative - Salinibacter ruber
(strain DSM 13855)
Length = 69
Score = 47.6 bits (108), Expect = 3e-04
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWF+ GYGF+ ++ ++DVF+H + + + + +G+ +EF + EKG
Sbjct: 3 TGTVKWFSPAEGYGFVEPDNGEDDVFLHHSEVPDED-------LEEGDRLEFEIEETEKG 55
Query: 99 FEAAGV 104
A +
Sbjct: 56 LNAVNI 61
>UniRef50_A4A3Y7 Cluster: Cold-shock domain family protein; n=1;
Congregibacter litoralis KT71|Rep: Cold-shock domain
family protein - Congregibacter litoralis KT71
Length = 189
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN G+GFI R + +++FVH +I + RS+ DG V + VV +KG
Sbjct: 126 GTVKWFNGTKGFGFIIR-ENGDEIFVHHRSII----GEGRRSLRDGAPVRYRVVTTDKGP 180
Query: 100 EAAGV 104
+A V
Sbjct: 181 QAEEV 185
>UniRef50_Q982F0 Cluster: Cold-shock protein; n=3; Mesorhizobium
loti|Rep: Cold-shock protein - Rhizobium loti
(Mesorhizobium loti)
Length = 97
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKW+ + G+GFI ++ ++DVFVH + + R+ + ++ +G+ V A G+KG
Sbjct: 33 GTVKWYKPEKGFGFIAPDNGEKDVFVHASTLTRS----GLSALVEGQKVFVACGQGKKGL 88
Query: 100 EAAGV 104
E +
Sbjct: 89 EVRSI 93
>UniRef50_Q6YPQ4 Cluster: Cold shock protein; n=3; Firmicutes|Rep:
Cold shock protein - Onion yellows phytoplasma
Length = 74
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 95
+K GT +WF+ GYGFI D K D+FVH ++I + +++ + + VEF V G
Sbjct: 4 KKQQGTCRWFSKDKGYGFIVSVDGK-DIFVHYSSIQTEVFGR--KTLNENDKVEFTVKEG 60
Query: 96 EKGFEAAGV 104
++G +A V
Sbjct: 61 DRGAQAVDV 69
>UniRef50_Q3Y013 Cluster: Cold-shock protein, DNA-binding; n=6;
cellular organisms|Rep: Cold-shock protein, DNA-binding
- Enterococcus faecium DO
Length = 35
Score = 47.2 bits (107), Expect = 4e-04
Identities = 21/34 (61%), Positives = 26/34 (76%), Gaps = 1/34 (2%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIAR 72
+GTVKWFN + G+GFI+R D DVFVH +AI R
Sbjct: 3 NGTVKWFNAEKGFGFISRED-GSDVFVHFSAIPR 35
>UniRef50_P0A971 Cluster: Cold shock-like protein cspD; n=12;
Gammaproteobacteria|Rep: Cold shock-like protein cspD -
Shigella flexneri
Length = 74
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVKWFN G+GFI ED+F H + I + R++ G++V+F V G KG
Sbjct: 4 GTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMD----GYRTLKAGQSVQFDVHQGPKGN 59
Query: 100 EAA 102
A+
Sbjct: 60 HAS 62
>UniRef50_Q8KES2 Cluster: Cold shock-like protein CspG; n=9;
Chlorobiaceae|Rep: Cold shock-like protein CspG -
Chlorobium tepidum
Length = 97
Score = 46.8 bits (106), Expect = 5e-04
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
VKWF+ K GYGFI D ED+FVH ++I + K + D VE+ + +KG +A
Sbjct: 6 VKWFDGKKGYGFILNPDGGEDIFVHFSSIISDQSFKVLNQDAD---VEYDLDKTQKGLQA 62
Query: 102 AGV 104
V
Sbjct: 63 KNV 65
>UniRef50_Q89E28 Cluster: Cold shock protein; n=8; cellular
organisms|Rep: Cold shock protein - Bradyrhizobium
japonicum
Length = 67
Score = 46.8 bits (106), Expect = 5e-04
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
GTVKWFN GYGFI +DVFVH +A+ + + ++ +G+ VE+ +A
Sbjct: 5 GTVKWFNPTKGYGFIQPASGGKDVFVHISAV----QKAGLSTLNEGQTVEYEEIA 55
>UniRef50_Q7NNC3 Cluster: Gsr0488 protein; n=1; Gloeobacter
violaceus|Rep: Gsr0488 protein - Gloeobacter violaceus
Length = 65
Score = 46.8 bits (106), Expect = 5e-04
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
V+WF++++GYG I R+DT E+VF+ TAI P + R++ AV F + G G A
Sbjct: 2 VRWFDLQAGYGAIARDDTGEEVFLLFTAI----PGEGYRTIAPSTAVHFELAQGPSGPVA 57
Query: 102 AGV 104
V
Sbjct: 58 RNV 60
>UniRef50_P46449 Cluster: Cold shock-like protein cspD; n=31;
Bacteria|Rep: Cold shock-like protein cspD - Haemophilus
influenzae
Length = 72
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G VKWFN G+GFI+ D+F H + I + RS+ G+ V+F V+ +KG
Sbjct: 4 GIVKWFNNAKGFGFISAEGVDADIFAHYSVIEMD----GYRSLKAGQKVQFEVLHSDKGS 59
Query: 100 EAAGV 104
A +
Sbjct: 60 HATKI 64
>UniRef50_P0A353 Cluster: Cold shock-like protein cspA; n=288;
Bacteria|Rep: Cold shock-like protein cspA - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 67
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G VKWFN + GYGFI +D+F H + I N +S+ + + V F G KG
Sbjct: 3 TGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQAN----GFKSLEENQRVSFVTAMGPKG 58
Query: 99 FEAAGV 104
+A +
Sbjct: 59 PQATKI 64
>UniRef50_Q7VLQ6 Cluster: Cold shock-like protein CspD; n=6;
Proteobacteria|Rep: Cold shock-like protein CspD -
Haemophilus ducreyi
Length = 68
Score = 46.4 bits (105), Expect = 7e-04
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G VKWFN G+GFI + + D+F H + I ++ RS+ G+ V+F +V E+G
Sbjct: 4 GIVKWFNNVKGFGFITCDTVEGDIFAHFSEIKQD----GYRSLKVGQKVQFELVTNERGA 59
Query: 100 EAAGVT 105
A ++
Sbjct: 60 SATHIS 65
>UniRef50_Q0I3L0 Cluster: Cold shock-like protein; n=2;
Proteobacteria|Rep: Cold shock-like protein -
Haemophilus somnus (strain 129Pt) (Histophilus somni
(strain 129Pt))
Length = 69
Score = 46.4 bits (105), Expect = 7e-04
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G VKWFN G+GF++ + DVF H + I + RS+ G+ V+ VV G+KG
Sbjct: 4 GIVKWFNNAKGFGFLSVESSDVDVFAHYSVI----EMEGYRSLKAGQKVQCEVVHGDKGS 59
Query: 100 EAAGV 104
A +
Sbjct: 60 HATKI 64
>UniRef50_A5V9E9 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Sphingomonas wittichii RW1|Rep: Putative
cold-shock DNA-binding domain protein - Sphingomonas
wittichii RW1
Length = 198
Score = 46.4 bits (105), Expect = 7e-04
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
AE V G VKWF+ G+GFI + + DV VH ++ R++ R R++ +G + VVA
Sbjct: 31 AETVVGAVKWFDATRGFGFIATDGDRGDVLVH-FSVLRDHGR---RTLPEGARIACEVVA 86
Query: 95 GEKGFEA 101
++G +A
Sbjct: 87 RDRGLQA 93
Score = 39.5 bits (88), Expect = 0.083
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIAR 72
VKWFN GYGF+ R+ +D+F+H + R
Sbjct: 137 VKWFNRLKGYGFLVRDGETQDIFIHMETVRR 167
>UniRef50_A4U251 Cluster: Cold shock DNA-binding domain protein;
n=3; Magnetospirillum|Rep: Cold shock DNA-binding domain
protein - Magnetospirillum gryphiswaldense
Length = 209
Score = 46.4 bits (105), Expect = 7e-04
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
+E V G VK+F+ + G+GF+ + +DVFVH A+ R+ ++++ G+ V
Sbjct: 141 SETVEGVVKFFSAEKGFGFVQTDQGGKDVFVHIKALERS----GIKALETGQRVRCTTTQ 196
Query: 95 GEKGFEA 101
G+KG +A
Sbjct: 197 GQKGPQA 203
Score = 42.3 bits (95), Expect = 0.012
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIAR 72
V V+ TVKWFN G+GF+ +D D F+H +A+ R
Sbjct: 47 VTQTNVTATVKWFNASKGFGFVAPSDGTPDAFLHISALER 86
>UniRef50_Q8YIC6 Cluster: COLD SHOCK PROTEIN CSPA; n=4;
Brucella|Rep: COLD SHOCK PROTEIN CSPA - Brucella
melitensis
Length = 101
Score = 46.0 bits (104), Expect = 0.001
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
+GTVKWFN G+GFI + DVFVH +A+ R + ++ +G+ V + +V
Sbjct: 35 TGTVKWFNTTKGFGFIQPDQGGTDVFVHISAV----QRAGLTTLDEGQKVSYEIV 85
>UniRef50_Q5ZWM5 Cluster: Cold shock domain family protein; n=6;
Bacteria|Rep: Cold shock domain family protein -
Legionella pneumophila subsp. pneumophila (strain
Philadelphia 1 /ATCC 33152 / DSM 7513)
Length = 87
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
+ K+ G VKWFN G+GFI + +D FVH ++I N +++ DG V F +
Sbjct: 15 MTNKIRGKVKWFNKDKGFGFI--ESSGKDYFVHFSSIQSN----GFKTLPDGATVLFKMG 68
Query: 94 AGEKGFEAAGV 104
G+KG +A V
Sbjct: 69 KGQKGPQAEEV 79
>UniRef50_Q5FNZ7 Cluster: Cold shock protein; n=1; Gluconobacter
oxydans|Rep: Cold shock protein - Gluconobacter oxydans
(Gluconobacter suboxydans)
Length = 96
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWFN G+GFI ++ +D FVH + + R + ++ +G+ V + + +G G
Sbjct: 31 TGTVKWFNSTKGFGFIQPDNGGQDAFVHISEL----ERAGMHTLNEGQHVSYELESGRNG 86
Query: 99 FEAA 102
+A
Sbjct: 87 KTSA 90
>UniRef50_UPI000155640A Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 502
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINR 56
V+A +V GTVKWFNV++GYGFINR
Sbjct: 56 VLATQVLGTVKWFNVRNGYGFINR 79
>UniRef50_Q28PH1 Cluster: Cold-shock DNA-binding domain protein;
n=6; Rhodobacterales|Rep: Cold-shock DNA-binding domain
protein - Jannaschia sp. (strain CCS1)
Length = 181
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
V+ VKWF+ G+GF N EDVFVH + R+ + GEAV VV G +
Sbjct: 113 VAARVKWFDKAKGFGFANVFGHSEDVFVHVEVLRRS----GFTELQPGEAVAMKVVDGPR 168
Query: 98 GFEAAGV 104
G AA V
Sbjct: 169 GRMAAEV 175
Score = 38.7 bits (86), Expect = 0.15
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
I V+G VKWF+ G+GF+ ++ D+ +H + R+ R S+ +G V
Sbjct: 18 ICPTVAGVVKWFDTTKGFGFVLSDEGGPDILLHAN-VLRSFGR---GSIAEGARVMLRTQ 73
Query: 94 AGEKGFEAAGVTGPGGEPVKGSPYAADK 121
A +G +A + E V G P D+
Sbjct: 74 ATGRGLQAVEIIAI--EAVVGEPTDPDR 99
>UniRef50_A3UBK6 Cluster: Cold-shock DNA-binding domain protein;
n=8; Bacteroidetes|Rep: Cold-shock DNA-binding domain
protein - Croceibacter atlanticus HTCC2559
Length = 64
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVK+FN G+GFI T E+ FVH T + + + + + VEF + G KG
Sbjct: 3 TGTVKFFNDTKGFGFIKEEGTNEEHFVHVTGL--------IDEIREDDRVEFELKQGNKG 54
Query: 99 FEAAGV 104
A V
Sbjct: 55 MNAVNV 60
>UniRef50_O33052 Cluster: Small cold-shock protein; n=7;
Corynebacterineae|Rep: Small cold-shock protein -
Mycobacterium leprae
Length = 136
Score = 44.0 bits (99), Expect = 0.004
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G VKW++ G+GF+++ D EDV+V +A+ V + G+ VEF V +G +G
Sbjct: 3 TGKVKWYDADKGFGFLSQED-GEDVYVRSSALP-----AGVEGLKAGQRVEFGVASGRRG 56
Query: 99 FEA 101
+A
Sbjct: 57 PQA 59
>UniRef50_Q1VQ89 Cluster: Cold shock protein; n=8;
Bacteroidetes|Rep: Cold shock protein - Psychroflexus
torquis ATCC 700755
Length = 63
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVK+FN G+GFI +D FVH + + + + +G+ VEF + G KG
Sbjct: 4 GTVKFFNDTKGFGFITEEGVDKDHFVHASGL--------IDEIREGDEVEFDLQEGNKGL 55
Query: 100 EAAGV 104
A V
Sbjct: 56 NAVNV 60
>UniRef50_Q03YA9 Cluster: Cold shock protein; n=1; Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293|Rep: Cold
shock protein - Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 /NCDO 523)
Length = 74
Score = 43.6 bits (98), Expect = 0.005
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVK + + GYG+I ++ +DVFVH I + +S+ GE V + +V G K
Sbjct: 3 TGTVKIWQKERGYGYITPDEGGDDVFVHFNGIDMD----GFKSLIQGEKVAYVLVQGYKS 58
Query: 99 FEAAGV 104
++AA V
Sbjct: 59 YQAAQV 64
>UniRef50_Q5NP11 Cluster: Cold shock protein; n=1; Zymomonas
mobilis|Rep: Cold shock protein - Zymomonas mobilis
Length = 174
Score = 43.2 bits (97), Expect = 0.007
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 41 TVKWFNVKSGYGFINRNDTKEDVFVHQTA 69
TVKWFN GYGF+ RN ++D+FVH A
Sbjct: 108 TVKWFNRTKGYGFLIRNADQQDIFVHAEA 136
>UniRef50_Q2RNN9 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 210
Score = 43.2 bits (97), Expect = 0.007
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+ TVKWFN G+GF+ +D + D F+H + + R + +G + + G+KG
Sbjct: 6 TATVKWFNATKGFGFVRVSDGEPDAFLHISVL----QRAGYSELPEGATIVCDLAPGQKG 61
Query: 99 FEAAGV-TGPGGEP 111
+ + + GG P
Sbjct: 62 MQVSEIYEVEGGSP 75
>UniRef50_Q1AWL7 Cluster: Cold-shock DNA-binding domain protein;
n=3; Bacteria|Rep: Cold-shock DNA-binding domain protein
- Rubrobacter xylanophilus (strain DSM 9941 / NBRC
16129)
Length = 197
Score = 43.2 bits (97), Expect = 0.007
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
+++ G VKWF+ + GYGF+ R ED+FVH + + + S+G G VE+ V
Sbjct: 131 SQREQGRVKWFDPEKGYGFLVR-PGGEDLFVHHSEVEGD-----ASSLGQGVEVEYEVGR 184
Query: 95 GEKGFEAAGV 104
E+G A V
Sbjct: 185 NERGPNARRV 194
>UniRef50_Q0APJ7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Maricaulis maris MCS10|Rep: Cold-shock DNA-binding
domain protein - Maricaulis maris (strain MCS10)
Length = 174
Score = 43.2 bits (97), Expect = 0.007
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
VKWF+ GYGF+ ++ + DVF+H + R + G+ +E V G KG A
Sbjct: 110 VKWFDALRGYGFVTCDNVEGDVFLHAATLR----RAGFEDIQPGDRIEVRCVEGPKGALA 165
Query: 102 AGVTGPG 108
A + G
Sbjct: 166 AEIKVAG 172
Score = 38.7 bits (86), Expect = 0.15
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
++ G VKW++ GYGFI+ +D + D+ +H + + R A+ + + V G+
Sbjct: 15 ELEGRVKWYDPARGYGFIDASDGEGDILLHASCLRRFGQGPALPNA----KIVCKAVQGD 70
Query: 97 KGFEA 101
KG +A
Sbjct: 71 KGRQA 75
>UniRef50_A3VSH0 Cluster: Cold shock protein; n=1; Parvularcula
bermudensis HTCC2503|Rep: Cold shock protein -
Parvularcula bermudensis HTCC2503
Length = 173
Score = 43.2 bits (97), Expect = 0.007
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 41 TVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFE 100
TVKWF+ GYGF+ + ED+FVH + + + G+ + + G KG
Sbjct: 108 TVKWFSRAKGYGFLTATNANEDIFVHMEVVR----AAGLSELQPGQRLRASYGRGTKGLL 163
Query: 101 AAGVTGP 107
AA + P
Sbjct: 164 AAAIEPP 170
Score = 40.3 bits (90), Expect = 0.048
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
+ ++ G VKWF+ GYGFI DV +H + + ++ A +G V +
Sbjct: 11 SREIRGFVKWFDQTKGYGFITDEAGGRDVLIHSSCLKQSGRATA----PEGAIVTCEAIE 66
Query: 95 GEKGFEAAGV 104
EKG +A +
Sbjct: 67 SEKGLQATRI 76
>UniRef50_A2TNS0 Cluster: Cold shock protein; n=4;
Bacteroidetes|Rep: Cold shock protein - Dokdonia
donghaensis MED134
Length = 82
Score = 43.2 bits (97), Expect = 0.007
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G VK+FN K G+GFI +++ E+VFVH T + + + + V F V GEKG
Sbjct: 21 GKVKFFNTKKGFGFIAIDNSDEEVFVHTTNVTGR--------LRENDKVTFEVEDGEKGP 72
Query: 100 EAAGV 104
A V
Sbjct: 73 SAVNV 77
>UniRef50_Q5GRS9 Cluster: Cold shock protein; n=3; Wolbachia|Rep:
Cold shock protein - Wolbachia sp. subsp. Brugia malayi
(strain TRS)
Length = 84
Score = 42.7 bits (96), Expect = 0.009
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPR-KAVRSVGDGEAVEFAVVAGEKG 98
G +KWFN + GYGFI D+FVH + + R+ R ++R GE E +
Sbjct: 4 GNIKWFNAEKGYGFIKPEANGNDIFVHISTLERSGIRPDSLR----GENKEKGIKGERVS 59
Query: 99 FEAAGVTGPGGEPVK 113
+E G GE K
Sbjct: 60 YELKEERGRNGEGKK 74
>UniRef50_Q0FAJ4 Cluster: Dead-box ATP-dependent RNA helicase; n=6;
Alphaproteobacteria|Rep: Dead-box ATP-dependent RNA
helicase - alpha proteobacterium HTCC2255
Length = 531
Score = 42.7 bits (96), Expect = 0.009
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
++GTV W+N G GFIN + +DVFVH +A+ + ++ V +G+ + + ++ EK
Sbjct: 2 LTGTVIWYNPVKGLGFINPDQGGDDVFVHMSALKAS----GLKVVKEGDMLTYELLLDEK 57
Query: 98 -GFEAA 102
G +AA
Sbjct: 58 TGKKAA 63
>UniRef50_A7HXE8 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Parvibaculum lavamentivorans DS-1|Rep:
Putative cold-shock DNA-binding domain protein -
Parvibaculum lavamentivorans DS-1
Length = 199
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
VKWFN GYGF+ R + D+F+H + R +R + G+ + G KG
Sbjct: 138 VKWFNRARGYGFVTRGEGTPDIFIHMETLR----RYGIRDLLPGQQINVRFGEGPKGLMV 193
Query: 102 AGV 104
A +
Sbjct: 194 AEI 196
Score = 41.5 bits (93), Expect = 0.021
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++ +++G VKWF+ GYGFI + +DV VH + + + + ++ +G V V
Sbjct: 34 VSFEITGVVKWFDAVKGYGFIIPENGGDDVLVHLSCL----KQAGLEALDEGTTVTCEAV 89
Query: 94 AGEKGFEAAGVTGPGG----EPVKGSPYAADK 121
KG +A V +P GS AA +
Sbjct: 90 RRPKGAQAIRVVDVDDTTAIKPTSGSARAASR 121
>UniRef50_Q6N6T9 Cluster: Cold shock DNA binding protein; n=38;
Alphaproteobacteria|Rep: Cold shock DNA binding protein
- Rhodopseudomonas palustris
Length = 235
Score = 42.3 bits (95), Expect = 0.012
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
++SG +KWF+ GYGF+ ++ DV +H T + R+ + A +G + V
Sbjct: 68 EISGVIKWFDASKGYGFVVPDNGWPDVLLHVTVLRRDGYQTAY----EGARIVVECVQRA 123
Query: 97 KGFEA 101
KG++A
Sbjct: 124 KGYQA 128
Score = 39.1 bits (87), Expect = 0.11
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
VKWFN G+GF+ + D+FVH + R + + G+ V G KG A
Sbjct: 165 VKWFNRLRGFGFLTCGEGTPDIFVHMETLR----RYGMTELRPGQYVLVRFGPGSKGMMA 220
Query: 102 AGVTGPGGEP 111
A + G P
Sbjct: 221 AEIQPENGAP 230
>UniRef50_Q2RWM8 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rhodospirillum rubrum ATCC 11170|Rep: Cold-shock
DNA-binding domain protein - Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255)
Length = 68
Score = 42.3 bits (95), Expect = 0.012
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
++GT+ WF+ +GYGFI +D D+ V A+ R +RS+ DG+ V + +
Sbjct: 2 LTGTITWFDTINGYGFIRPDDGGGDIAVDMPAL----DRSGLRSLRDGQRVAYRLTRPRF 57
Query: 98 GFEAAGV 104
G AG+
Sbjct: 58 GGAMAGM 64
>UniRef50_Q0M3I1 Cluster: Cold-shock protein, DNA-binding; n=1;
Caulobacter sp. K31|Rep: Cold-shock protein, DNA-binding
- Caulobacter sp. K31
Length = 201
Score = 42.3 bits (95), Expect = 0.012
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
VKWFN GYGF+ R+ D+FVH + R GD V FA G KG
Sbjct: 138 VKWFNRTKGYGFVVRDGQPGDIFVHIETLRRGGLEDL--QPGDDVMVRFA--EGPKGLVV 193
Query: 102 AGVT 105
A +T
Sbjct: 194 AEIT 197
Score = 39.1 bits (87), Expect = 0.11
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKE----DVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
++SG VKWF+ GYGFI +D + DV +H T++ RN R+ +G + V
Sbjct: 17 RISGRVKWFDTGKGYGFIVPDDPGQTGLKDVLLHVTSL-RNCGRETAL---EGAVIVCDV 72
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADKR 122
V KG++ + V E +P KR
Sbjct: 73 VKRPKGWQVSEVVDL-DESAASTPLERPKR 101
>UniRef50_Q0C0S6 Cluster: Cold shock DNA-binding protein; n=1;
Hyphomonas neptunium ATCC 15444|Rep: Cold shock
DNA-binding protein - Hyphomonas neptunium (strain ATCC
15444)
Length = 175
Score = 42.3 bits (95), Expect = 0.012
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 41 TVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKA-VRSVGDGEAVEFAVVAGEKG 98
T+KWFN GYGF+ R+ + D+FVH A RKA + G ++ + G KG
Sbjct: 112 TLKWFNRTRGYGFVLRDGQETDIFVHAVAF-----RKAGYEDIEPGTRIDVIIEVGAKG 165
>UniRef50_A4EHC3 Cluster: Cold shock protein; n=1; Roseobacter sp.
CCS2|Rep: Cold shock protein - Roseobacter sp. CCS2
Length = 151
Score = 42.3 bits (95), Expect = 0.012
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V+ E++ VKWF+ GYGF+N ED+FV A R + ++S GD V+ A
Sbjct: 80 VLEERIPVRVKWFDPSKGYGFVNAFGCAEDIFV-GAATLRKSMLGDLQS-GDALCVQIAE 137
Query: 93 VAGEK 97
G K
Sbjct: 138 TEGRK 142
Score = 37.1 bits (82), Expect = 0.44
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFE 100
+KWF+ G+GF+ + + D +HQ I R S+ +G +VEFA + E GF+
Sbjct: 1 MKWFDAYRGFGFVVIDGIETDFLLHQN-ILHGFGR---TSIAEGSSVEFAYQSTENGFK 55
>UniRef50_A2U2L8 Cluster: Cold shock protein; n=3;
Bacteroidetes|Rep: Cold shock protein - Polaribacter
dokdonensis MED152
Length = 76
Score = 42.3 bits (95), Expect = 0.012
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVK+FN G+GFI T ++ FVH + + V + + + VEF + G KG
Sbjct: 17 GTVKFFNESKGFGFITEEGTNKEHFVHVSGL--------VDEIRENDEVEFDLQDGRKGL 68
Query: 100 EAAGV 104
A V
Sbjct: 69 NAVNV 73
>UniRef50_Q9HSS3 Cluster: Cold shock protein; n=7;
Halobacteriaceae|Rep: Cold shock protein - Halobacterium
salinarium (Halobacterium halobium)
Length = 74
Score = 41.9 bits (94), Expect = 0.016
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G V +FN GYGFI D EDVF H + P + +G+ VEF + +KG
Sbjct: 13 TGEVDFFNDTGGYGFIETEDADEDVFFHMEDV--GGP-----DLEEGQEVEFDIEQADKG 65
Query: 99 FEAAGVT 105
A +T
Sbjct: 66 PRATNLT 72
>UniRef50_Q9ZCP9 Cluster: Cold shock-like protein cspA; n=12;
Bacteria|Rep: Cold shock-like protein cspA - Rickettsia
prowazekii
Length = 70
Score = 41.9 bits (94), Expect = 0.016
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
+A + G VKW+N +GFI +++ +DVFVH++AI + S+ +G+ V F +
Sbjct: 1 MATNIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAI----DAAGLHSLEEGQEVIFDI 55
>UniRef50_Q1AY27 Cluster: Cold-shock DNA-binding domain protein;
n=1; Rubrobacter xylanophilus DSM 9941|Rep: Cold-shock
DNA-binding domain protein - Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129)
Length = 69
Score = 41.5 bits (93), Expect = 0.021
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
G VKWF+ + G+GFI ++ E+V VH T I + R++ +G VE+A V E G
Sbjct: 4 GRVKWFSGEKGFGFI-ETESGEEVLVHYTEI----KGEGFRALEEGAEVEYAAVKTEDG 57
>UniRef50_Q0YRJ0 Cluster: Cold-shock protein, DNA-binding; n=1;
Chlorobium ferrooxidans DSM 13031|Rep: Cold-shock
protein, DNA-binding - Chlorobium ferrooxidans DSM 13031
Length = 70
Score = 41.5 bits (93), Expect = 0.021
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
V+G VKWF+V+ G+GFI + ED+FVH + I + + D V+F + A
Sbjct: 2 VNGKVKWFDVRKGFGFILNPNGGEDIFVHFSNIVSEEKFRFLNQDAD---VDFELEARGN 58
Query: 98 GFEAAGV 104
+A V
Sbjct: 59 RLQALNV 65
>UniRef50_Q8I248 Cluster: Cold-shock protein, putative; n=3;
Plasmodium|Rep: Cold-shock protein, putative -
Plasmodium falciparum (isolate 3D7)
Length = 150
Score = 41.5 bits (93), Expect = 0.021
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARN 73
+K++G V F+ + GYGFI ND D+FVH T I ++
Sbjct: 28 DKITGNVIMFDKRKGYGFIKPNDGGPDIFVHYTDICQS 65
>UniRef50_Q6F7A1 Cluster: Putative cold shock protein; n=2;
Acinetobacter|Rep: Putative cold shock protein -
Acinetobacter sp. (strain ADP1)
Length = 208
Score = 41.1 bits (92), Expect = 0.027
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 42 VKWFNVKSGYGFINRNDTKED-VFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
V+WF+ K GYGFI ND+++ VF+H AR PR V G A+E+ V+ E+G
Sbjct: 8 VEWFDDK-GYGFIQPNDSQKGRVFLHIRDFARKGPRPIV-----GCALEYLVILDEQG 59
>UniRef50_Q2RZT3 Cluster: Conserved domain protein; n=2;
Salinibacter ruber DSM 13855|Rep: Conserved domain
protein - Salinibacter ruber (strain DSM 13855)
Length = 75
Score = 41.1 bits (92), Expect = 0.027
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G +K+F+ G+GFI D EDVF+H I+ + +R +G+ +E+ EKG
Sbjct: 4 GKLKFFDTSRGFGFIEPLDGSEDVFLHANNISGMTSGEDLR---EGQTIEYETEQTEKGL 60
Query: 100 EA 101
A
Sbjct: 61 SA 62
>UniRef50_Q1GHI4 Cluster: Cold-shock DNA-binding domain protein;
n=19; Rhodobacterales|Rep: Cold-shock DNA-binding domain
protein - Silicibacter sp. (strain TM1040)
Length = 179
Score = 41.1 bits (92), Expect = 0.027
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 95
+ V G VKWF+ GYGFI D D+ +H + RN + SV DG +E
Sbjct: 9 QHVRGLVKWFDPAKGYGFIVCPDDGPDILLH-VNVLRNFGQS---SVADGAGIEVVTHRT 64
Query: 96 EKGFEAAGVTGPGGEPVKGSPYAAD 120
++G +A + + +P +D
Sbjct: 65 DRGVQAVEIVSITPPEREDTPVLSD 89
Score = 41.1 bits (92), Expect = 0.027
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
VKWF+ G+GF N EDVF+H + ++ + V GEA+ V+ G++G A
Sbjct: 108 VKWFDKAKGFGFANVFGRDEDVFLHVEVLRQS----GLSDVQSGEALAMRVIDGKRGRMA 163
Query: 102 AGV 104
V
Sbjct: 164 VDV 166
>UniRef50_A0ACJ4 Cluster: Putative DNA-binding protein; n=3;
Actinomycetales|Rep: Putative DNA-binding protein -
Streptomyces ambofaciens ATCC 23877
Length = 172
Score = 41.1 bits (92), Expect = 0.027
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G + F+ GYGFI ++ EDVF+H +A + R +G G VEF V G++G
Sbjct: 9 GKIIRFDEFRGYGFIAPDNGGEDVFIHVNDLAFDK-----RLLGPGMKVEFDVEEGDRGL 63
Query: 100 EAAGVTGPGGEPVKGSP 116
+A+ V G + P
Sbjct: 64 KASRVRIQNGSAERERP 80
>UniRef50_P0A985 Cluster: Cold shock-like protein cspH; n=24;
Enterobacteriaceae|Rep: Cold shock-like protein cspH -
Shigella flexneri
Length = 70
Score = 41.1 bits (92), Expect = 0.027
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
++ K++G VK F+ KSG GFI +D +++V VH +A PR A + G VEF V
Sbjct: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAF---TPRDAEVLI-PGLRVEFCRV 56
Query: 94 AGEKGFEAAGV 104
G +G AA V
Sbjct: 57 NGLRGPTAANV 67
>UniRef50_Q4S6T5 Cluster: Chromosome 14 SCAF14723, whole genome
shotgun sequence; n=3; Tetraodontidae|Rep: Chromosome 14
SCAF14723, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 206
Score = 40.7 bits (91), Expect = 0.036
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 80 RSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 115
RS+ +GE VEF KG E+ VTGPGG P GS
Sbjct: 111 RSLKEGEQVEFTFKKSTKGLESLRVTGPGGGPCAGS 146
Score = 37.9 bits (84), Expect = 0.25
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 39 SGTVKWFNVKSGYGFINRN-------DTKEDVFVHQTAIARN 73
SG KWFNV+ G+GFI+ D DVFVHQ+ RN
Sbjct: 8 SGFCKWFNVRMGFGFISMTHSEGSPVDPPLDVFVHQSVGGRN 49
>UniRef50_Q1GT29 Cluster: Cold-shock DNA-binding domain protein;
n=1; Sphingopyxis alaskensis|Rep: Cold-shock
DNA-binding domain protein - Sphingopyxis alaskensis
(Sphingomonas alaskensis)
Length = 90
Score = 40.7 bits (91), Expect = 0.036
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 70
GTVK+FN GYGFI D D FVH TA+
Sbjct: 26 GTVKFFNNDKGYGFIENEDGSGDSFVHITAV 56
>UniRef50_Q6ALH9 Cluster: Hypothetical cold-shock protein; n=1;
Desulfotalea psychrophila|Rep: Hypothetical cold-shock
protein - Desulfotalea psychrophila
Length = 204
Score = 40.3 bits (90), Expect = 0.048
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
GT+K +N + GYGFI ++ DVF+H A + R + G+ + + +G+KG
Sbjct: 4 GTIKHWNDEKGYGFITPDNGGNDVFLHIKAFKKRPHRPEI-----GQVISYGTTSGDKG 57
>UniRef50_A7BYF1 Cluster: Putative uncharacterized protein; n=1;
Beggiatoa sp. PS|Rep: Putative uncharacterized protein -
Beggiatoa sp. PS
Length = 189
Score = 40.3 bits (90), Expect = 0.048
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 9/80 (11%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
+ G V F+ K G+GFI + EDVFVH I + +S+ G+ VEF +K
Sbjct: 1 MEGIVVKFDKKRGFGFIRSDKFSEDVFVHLKNI------REQQSLSPGQKVEFDTEQTDK 54
Query: 98 GFEAAGVTGPGGEPVKGSPY 117
G A V PG + + SPY
Sbjct: 55 GLSAINVI-PGKK--QTSPY 71
>UniRef50_Q1RHK6 Cluster: Cold shock-like protein cspA; n=2;
Rickettsia bellii RML369-C|Rep: Cold shock-like protein
cspA - Rickettsia bellii (strain RML369-C)
Length = 70
Score = 40.3 bits (90), Expect = 0.048
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 70
+ G VKWFN +GFI + + +DVFVH++A+
Sbjct: 5 IVGKVKWFNPTKNFGFIEQENGGKDVFVHRSAV 37
>UniRef50_Q3VJZ1 Cluster: Cold-shock protein, DNA-binding precursor;
n=2; Bacteroidetes/Chlorobi group|Rep: Cold-shock
protein, DNA-binding precursor - Pelodictyon
phaeoclathratiforme BU-1
Length = 91
Score = 39.9 bits (89), Expect = 0.063
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTVKWFN G+GFI ++ DVFVH + ++ + ++ + + V++ +V + G
Sbjct: 26 TGTVKWFNKMKGFGFIIPDNGGADVFVHINELEKS----GLATLNEADKVKYDMVE-KNG 80
Query: 99 FEAAG 103
AAG
Sbjct: 81 KVAAG 85
>UniRef50_A5ZS66 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 75
Score = 39.9 bits (89), Expect = 0.063
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK 77
++E + GTVKWF+ + GYGFI D D F H + I + RK
Sbjct: 1 MSETLQGTVKWFSAQKGYGFITGED-GIDYFAHFSEIQMDGYRK 43
>UniRef50_Q4Q8I6 Cluster: RNA binding protein rbp16, putative; n=5;
Trypanosomatidae|Rep: RNA binding protein rbp16,
putative - Leishmania major
Length = 142
Score = 39.9 bits (89), Expect = 0.063
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
V W + + G+GFI N K+ FVH +A+ R++ + VEF V + + A
Sbjct: 23 VSWMSGR-GFGFIEDNADKKQHFVHFSAL--QTETGGYRALAVDQEVEFEVASQDGRTRA 79
Query: 102 AGVTGPGGEPVKGSP 116
VT PGG + P
Sbjct: 80 ENVTAPGGGKLPSGP 94
>UniRef50_Q9ZAH1 Cluster: Cold shock protein C; n=10;
Streptococcaceae|Rep: Cold shock protein C - Lactococcus
lactis
Length = 66
Score = 39.1 bits (87), Expect = 0.11
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G + WFN GYGFI +D +DVF + +I N+ +K +G+ V F + +G
Sbjct: 4 GKINWFNADKGYGFIMADD-MQDVFAYLLSIQGNDFKK----YDEGQKVTFDIKMTSRGR 58
Query: 100 EAAGV 104
A+ V
Sbjct: 59 YASNV 63
>UniRef50_Q1QLF4 Cluster: Cold-shock DNA-binding domain protein;
n=1; Nitrobacter hamburgensis X14|Rep: Cold-shock
DNA-binding domain protein - Nitrobacter hamburgensis
(strain X14 / DSM 10229)
Length = 68
Score = 39.1 bits (87), Expect = 0.11
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIA 71
+G+VK+FN + GYGFI +D D+F+H +A
Sbjct: 3 TGSVKFFNAEKGYGFIQPDDGTPDIFLHVHGLA 35
>UniRef50_A1SNP5 Cluster: Cold-shock protein, DNA-binding; n=26;
Actinobacteria (class)|Rep: Cold-shock protein,
DNA-binding - Nocardioides sp. (strain BAA-499 / JS614)
Length = 131
Score = 39.1 bits (87), Expect = 0.11
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G VKWF+ + G+GF+++ + DV+V A+ S+ G VEF + G +G
Sbjct: 3 TGKVKWFDAEKGFGFLSQ-ENGPDVYVRSEALP-----AGTSSLKAGTRVEFGIAQGRRG 56
Query: 99 FEAAGV 104
+A V
Sbjct: 57 DQALQV 62
>UniRef50_A1ZFN2 Cluster: Conserved domain protein; n=2;
Flexibacteraceae|Rep: Conserved domain protein -
Microscilla marina ATCC 23134
Length = 64
Score = 38.3 bits (85), Expect = 0.19
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVH 66
G VK+F GYGFI +DT ED+F H
Sbjct: 4 GVVKFFKEDKGYGFITNSDTGEDIFFH 30
>UniRef50_Q4AG52 Cluster: Cold-shock protein, DNA-binding; n=3;
Bacteroidetes/Chlorobi group|Rep: Cold-shock protein,
DNA-binding - Chlorobium phaeobacteroides BS1
Length = 149
Score = 37.9 bits (84), Expect = 0.25
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G V +FN G+GFI +T+E VFVH NN + + D V F V G KG
Sbjct: 88 NGVVTFFNETKGFGFIRDLETQESVFVHV-----NN---LIEPIKDNNMVSFEVEMGPKG 139
>UniRef50_Q12K82 Cluster: Putative uncharacterized protein; n=1;
Shewanella denitrificans OS217|Rep: Putative
uncharacterized protein - Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013)
Length = 196
Score = 37.9 bits (84), Expect = 0.25
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
V+W + K G+GFI N T +VF+H +A+ R A R + + + +A+VA ++G
Sbjct: 8 VRWDDDK-GFGFIRPNLTGPEVFLHISAL-----RNASRRPQEDDVITYALVADKQGRPT 61
Query: 102 AGVTGPGGEPVKGSPYAADKRR 123
A G+ +K S A +R
Sbjct: 62 AANATLTGDKLKSSQGAKRNQR 83
>UniRef50_Q56922 Cluster: Major cold shock protein; n=31;
Enterobacteriaceae|Rep: Major cold shock protein -
Yersinia enterocolitica
Length = 46
Score = 37.9 bits (84), Expect = 0.25
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 50 GYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
G+GFI D +DVFVH +AI N+ +++ +G+ VEF++ G K
Sbjct: 3 GFGFITPADGSKDVFVHFSAIQSND----FKTLDEGQKVEFSIENGAK 46
>UniRef50_UPI000150A0B6 Cluster: hypothetical protein
TTHERM_00340170; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00340170 - Tetrahymena
thermophila SB210
Length = 864
Score = 37.5 bits (83), Expect = 0.33
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 66
EK GT+K+F+ YGFI ++++ D+FVH
Sbjct: 617 EKYKGTLKFFDQDKNYGFIVEDESRTDIFVH 647
>UniRef50_A3X5Q6 Cluster: Putative uncharacterized protein; n=1;
Roseobacter sp. MED193|Rep: Putative uncharacterized
protein - Roseobacter sp. MED193
Length = 463
Score = 37.5 bits (83), Expect = 0.33
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVE 89
+ G +K F G+GFI + EDVF H T + ++ R AV + D +A E
Sbjct: 1 MQGKIKAFIHDKGFGFIEVDGQSEDVFFHITTVKDSSVRCAVGEIVDFDAAE 52
>UniRef50_A3WZM6 Cluster: Cold shock DNA binding protein; n=1;
Nitrobacter sp. Nb-311A|Rep: Cold shock DNA binding
protein - Nitrobacter sp. Nb-311A
Length = 77
Score = 37.5 bits (83), Expect = 0.33
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
K GTV +N + G+GF+ R+ + ++FVH + + +A S+ G+ +EF + E
Sbjct: 9 KYRGTVVHWNAERGFGFVQRDTDQREIFVHISEV-----DEAYESLVLGQRIEFEIAESE 63
Query: 97 K 97
+
Sbjct: 64 R 64
>UniRef50_Q5P4M3 Cluster: Probable cold shock family protein; n=1;
Azoarcus sp. EbN1|Rep: Probable cold shock family
protein - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 189
Score = 37.1 bits (82), Expect = 0.44
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VAG 95
++ GT+ +N G+GFI D +VFVH +A R+ R + GE + F + +
Sbjct: 2 RIEGTLGKWNDDRGFGFIVPKDGGPEVFVHVSAFPRDGRRPQI-----GEPLSFEIELDK 56
Query: 96 EKGFEAAGVTGPG 108
++ A GV+ PG
Sbjct: 57 DRKKRAVGVSRPG 69
>UniRef50_Q475L4 Cluster: Cold-shock protein, DNA-binding; n=1;
Ralstonia eutropha JMP134|Rep: Cold-shock protein,
DNA-binding - Ralstonia eutropha (strain JMP134)
(Alcaligenes eutrophus)
Length = 195
Score = 37.1 bits (82), Expect = 0.44
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
++SGT+K +N G+GFI ++ D+FVH + R + GE++ F V +
Sbjct: 11 RISGTLKSWNKDKGFGFIAPSNGGRDIFVHISDYPRQGGMPKI-----GESLTFLVTLNQ 65
Query: 97 KG-FEAAGVTGPG 108
G +A V PG
Sbjct: 66 DGKNKAINVQRPG 78
>UniRef50_A4FKV9 Cluster: Putative DNA-binding protein; n=1;
Saccharopolyspora erythraea NRRL 2338|Rep: Putative
DNA-binding protein - Saccharopolyspora erythraea
(strain NRRL 23338)
Length = 150
Score = 36.7 bits (81), Expect = 0.59
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTV F+ GYGFI + EDVF+H +I ++ +R G VEF V G +G
Sbjct: 3 TGTVVRFDGIKGYGFIAPDAGGEDVFLH-ASILDEELKEVLRG---GMRVEFEAVPGNQG 58
Query: 99 FEAAGV 104
+A V
Sbjct: 59 TKAMTV 64
>UniRef50_Q74JX5 Cluster: Cold shock protein; n=5;
Lactobacillus|Rep: Cold shock protein - Lactobacillus
johnsonii
Length = 69
Score = 36.3 bits (80), Expect = 0.77
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GTVK F+ S YGFI + T FV +I +K + G+ V + + G+KG
Sbjct: 4 GTVKQFDPNSAYGFIEDDLTHSSYFVFYKSIKEEGYKK----LNVGQRVRYQLAQGKKGL 59
Query: 100 EAAGV 104
+ V
Sbjct: 60 QCINV 64
>UniRef50_Q5L9T7 Cluster: Cold shock-like protein; n=2; Bacteroides
fragilis|Rep: Cold shock-like protein - Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343)
Length = 69
Score = 36.3 bits (80), Expect = 0.77
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
G +++FN GYGF+ D E F H ++ A ++ +G+ V F + G +G
Sbjct: 8 GRIEYFNAAKGYGFVKDADNGEKYFFHISS--------APATIAEGDRVTFEIERGMRGM 59
Query: 100 EAAGVT 105
A ++
Sbjct: 60 NAVRIS 65
>UniRef50_A0X3F5 Cluster: Cold-shock DNA-binding domain protein;
n=1; Shewanella pealeana ATCC 700345|Rep: Cold-shock
DNA-binding domain protein - Shewanella pealeana ATCC
700345
Length = 205
Score = 36.3 bits (80), Expect = 0.77
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
A+ +G + +N G+GFI + K+ VF+H +A A +PR G+ V+F +
Sbjct: 4 AQVSTGVIDSWNDDKGFGFIQIPEQKQQVFLHISAFASQSPRPQ-----SGKQVQFTLAK 58
Query: 95 GEKG 98
++G
Sbjct: 59 DKQG 62
>UniRef50_A0UNB6 Cluster: Cold-shock DNA-binding domain protein;
n=1; Burkholderia multivorans ATCC 17616|Rep: Cold-shock
DNA-binding domain protein - Burkholderia multivorans
ATCC 17616
Length = 193
Score = 36.3 bits (80), Expect = 0.77
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVH-QTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
GTVKWF+ G+GFI ++ D F H + + PR +G+ VEF + ++G
Sbjct: 3 GTVKWFSKDKGHGFI-YGESAVDYFFHVSDVVGADAPR-------EGDIVEFDATSNKRG 54
Query: 99 FEAAGV 104
AA V
Sbjct: 55 PRAATV 60
>UniRef50_UPI00006CB81E Cluster: conserved hypothetical protein;
n=1; Tetrahymena thermophila SB210|Rep: conserved
hypothetical protein - Tetrahymena thermophila SB210
Length = 1152
Score = 35.5 bits (78), Expect = 1.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVH 66
EK G +K+F+ + +GF N ++ + DVFVH
Sbjct: 878 EKKKGRLKFFDTSNNFGFFNLDEDQSDVFVH 908
>UniRef50_Q4FUZ6 Cluster: Possible guanine-specific ribonuclease
with a cold-shock DNA-binding domain; n=2;
Psychrobacter|Rep: Possible guanine-specific
ribonuclease with a cold-shock DNA-binding domain -
Psychrobacter arcticum
Length = 247
Score = 35.5 bits (78), Expect = 1.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNP 75
SG +K +N GYGFI+ ++ EDVF H ++ P
Sbjct: 3 SGKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVQMAQP 39
>UniRef50_Q9KI38 Cluster: Ysb; n=2; Agrobacterium tumefaciens|Rep:
Ysb - Agrobacterium tumefaciens
Length = 100
Score = 35.5 bits (78), Expect = 1.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 70
+G VKWF+ +GFI +D DVF+H ++I
Sbjct: 3 TGKVKWFDATKRFGFITPDDGGPDVFLHLSSI 34
>UniRef50_A2SHE7 Cluster: Cold-shock DNA-binding domain; n=1;
Methylibium petroleiphilum PM1|Rep: Cold-shock
DNA-binding domain - Methylibium petroleiphilum (strain
PM1)
Length = 203
Score = 35.5 bits (78), Expect = 1.4
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
++ G +K +N + G+GFI+ +D+FVH A R V G+AV F V G
Sbjct: 2 RLDGKLKSWNDERGFGFIDPVHGGQDIFVHIKAFPSGTGRPTV-----GQAVTFEVELGP 56
Query: 97 KGFEAA 102
G + A
Sbjct: 57 NGKKRA 62
>UniRef50_Q51929 Cluster: Major cold shock protein; n=74;
Bacteria|Rep: Major cold shock protein - Photobacterium
mondopomensis
Length = 46
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 48 KSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
+ G+GF+ +N+ DVFVH AIA + +++ +G+ V F V G+K
Sbjct: 1 EKGFGFLTQNNGGADVFVHFRAIA----SEGFKTLTEGQKVSFDVEQGQK 46
>UniRef50_A6W4V4 Cluster: Putative cold-shock DNA-binding domain
protein; n=1; Kineococcus radiotolerans SRS30216|Rep:
Putative cold-shock DNA-binding domain protein -
Kineococcus radiotolerans SRS30216
Length = 156
Score = 35.1 bits (77), Expect = 1.8
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV 93
+A G V+ F+ G+GFI D E+VF H + +G +V+F +
Sbjct: 1 MASLAKGKVRSFDDGRGFGFITSPDCPENVFFHVKDVVDLEAEDL-----EGASVQFTLD 55
Query: 94 AGEKGFEAAGVTGPGGEPVKG 114
G++G++A V P G +G
Sbjct: 56 QGDRGYKATDVR-PLGSAGRG 75
>UniRef50_A5EWK7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Dichelobacter nodosus VCS1703A|Rep: Cold-shock
DNA-binding domain protein - Dichelobacter nodosus
(strain VCS1703A)
Length = 210
Score = 35.1 bits (77), Expect = 1.8
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPR 76
E +GTV ++N G+GFI+ N+ + +VF H + A N R
Sbjct: 9 EICTGTVVYWNDDKGFGFIDTNEKQANVFFHISHFAYENRR 49
>UniRef50_A0BFX7 Cluster: Chromosome undetermined scaffold_105,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_105,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 383
Score = 35.1 bits (77), Expect = 1.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQ 67
E+V G +K++N YGF + K+D+FVHQ
Sbjct: 299 ERVIGYLKFYNESKQYGFFLDDKNKKDIFVHQ 330
>UniRef50_Q48493 Cluster: Major cold shock protein; n=50;
Bacteria|Rep: Major cold shock protein - Klebsiella
pneumoniae
Length = 46
Score = 35.1 bits (77), Expect = 1.8
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 50 GYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEK 97
G+GFI+ D +DVFVH +AI + + +++ +G+ V F + G K
Sbjct: 3 GFGFISPKDGSKDVFVHFSAIQSD----SFKTLNEGQEVSFTIENGAK 46
>UniRef50_UPI00006CB6F6 Cluster: ''''Cold-shock'''' DNA-binding
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: ''''Cold-shock'''' DNA-binding domain
containing protein - Tetrahymena thermophila SB210
Length = 725
Score = 34.7 bits (76), Expect = 2.4
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNN-PRKAVRSVGDGEAVEFA 91
G++K+F+ YGFI +D D+FVH + + ++ ++S G + F+
Sbjct: 615 GSLKFFDENKNYGFIVMDDDNRDIFVHYDDLQKAGITKEFLKSSKQGNVIRFS 667
>UniRef50_Q5YVF2 Cluster: Putative cold shock protein; n=1;
Nocardia farcinica|Rep: Putative cold shock protein -
Nocardia farcinica
Length = 122
Score = 34.7 bits (76), Expect = 2.4
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 70
GTV WF+ + G+GFI +D VFV AI
Sbjct: 54 GTVAWFDAEKGFGFITPDDRSPAVFVEFHAI 84
>UniRef50_Q1YTJ3 Cluster: Cold shock protein; n=1; gamma
proteobacterium HTCC2207|Rep: Cold shock protein - gamma
proteobacterium HTCC2207
Length = 89
Score = 34.7 bits (76), Expect = 2.4
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G VKWF+ G+GFI ++ + ++F H +N + +++ + V + V G+ G
Sbjct: 4 TGRVKWFSNDRGFGFIEPDNGERELFAHH----QNIIMEGYKTLKCFQRVTYDVEHGKNG 59
Query: 99 FEAAG-VTGPGGEPVKGS 115
A + G +P K S
Sbjct: 60 RHAVNIIPGEAPKPQKSS 77
>UniRef50_Q127M7 Cluster: Cold-shock DNA-binding domain protein;
n=1; Polaromonas sp. JS666|Rep: Cold-shock DNA-binding
domain protein - Polaromonas sp. (strain JS666 / ATCC
BAA-500)
Length = 193
Score = 34.7 bits (76), Expect = 2.4
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
+ GT+K +N + G GFI + +++FVH +A R+ AV GE + F V
Sbjct: 7 RFDGTLKKWNAERGLGFIVADQGGQEIFVHISAFPRDGRLPAV-----GEPLSFEVEPDR 61
Query: 97 KGFEAAGVTGPGGEPVKGSPYAA 119
G + A G + YAA
Sbjct: 62 DGKKCAVRIHRRGASQPTAAYAA 84
>UniRef50_A2UVR3 Cluster: Cold-shock DNA-binding domain protein;
n=1; Shewanella putrefaciens 200|Rep: Cold-shock
DNA-binding domain protein - Shewanella putrefaciens 200
Length = 149
Score = 34.7 bits (76), Expect = 2.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGE 96
++ G VKWF+V G+GFI D + H + + + A+ +GD V F ++
Sbjct: 2 RIQGVVKWFSVPQGFGFITSITEGTDHYFHVSDVIGS----ALPEIGD--KVTFETISTP 55
Query: 97 KGFEAAGV 104
KG V
Sbjct: 56 KGLRGKRV 63
>UniRef50_A1GFH1 Cluster: Cold-shock DNA-binding domain protein;
n=2; Salinispora|Rep: Cold-shock DNA-binding domain
protein - Salinispora arenicola CNS205
Length = 139
Score = 34.7 bits (76), Expect = 2.4
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
GT+ F+ GYGFI +DVFVH + R AV + G V + VV E+G
Sbjct: 5 GTIVRFDDVRGYGFIAPFGGGDDVFVHANDF--GDQRHAVAA---GMRVSYEVVQSERGL 59
Query: 100 EAAGV 104
+ A V
Sbjct: 60 KVASV 64
>UniRef50_Q9HP26 Cluster: Cold shock protein; n=11;
Halobacteriaceae|Rep: Cold shock protein - Halobacterium
salinarium (Halobacterium halobium)
Length = 69
Score = 34.3 bits (75), Expect = 3.1
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 39 SGTVKWFNVKSGYGFINRN----DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
SG V +FN GYGFI+ + D EDVF H + P + +G+ VEF + +
Sbjct: 3 SGKVDFFNDTGGYGFISTDADDVDDDEDVFFHMEDV--GGP-----DLEEGQEVEFDIES 55
Query: 95 GEKGFEAAGV 104
KG A +
Sbjct: 56 SPKGPRATNL 65
>UniRef50_P81622 Cluster: Cold shock protein CspSt; n=6;
Streptococcus thermophilus|Rep: Cold shock protein
CspSt - Streptococcus thermophilus
Length = 21
Score = 34.3 bits (75), Expect = 3.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 39 SGTVKWFNVKSGYGFINRND 58
+GTVKWFN + G+GFI D
Sbjct: 2 NGTVKWFNAEKGFGFITSED 21
>UniRef50_Q48AJ7 Cluster: Cold-shock DNA-binding domain family
protein; n=1; Colwellia psychrerythraea 34H|Rep:
Cold-shock DNA-binding domain family protein - Colwellia
psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 201
Score = 33.9 bits (74), Expect = 4.1
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 42 VKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEA 101
++W N +GFI N + + +F+H+TA+ N + + + F+V+ +G
Sbjct: 8 IRW-NTDKAFGFITPNGSGDTIFIHKTALKNRNRTPKINDI-----ISFSVIQDNQGRYC 61
Query: 102 AGVTGPGGE 110
A GE
Sbjct: 62 ADQATFAGE 70
>UniRef50_Q03EZ0 Cluster: Cold shock protein; n=1; Pediococcus
pentosaceus ATCC 25745|Rep: Cold shock protein -
Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Length = 69
Score = 33.9 bits (74), Expect = 4.1
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+GTV+ F+ + GYGFI + + VF H T I + +++ GE V+ + G KG
Sbjct: 3 TGTVESFDKEKGYGFI-ETASGDKVFAHYTVIQSED----YKTLEVGEKVKLMLADGPKG 57
Query: 99 FEAAGV 104
A V
Sbjct: 58 LIAVKV 63
>UniRef50_A6E1A1 Cluster: Peptidase S49; n=2; Bacteria|Rep:
Peptidase S49 - Roseovarius sp. TM1035
Length = 262
Score = 33.9 bits (74), Expect = 4.1
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 53 FINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPV 112
F+NR T + + PR A+ G +E A G+ A + PGG PV
Sbjct: 4 FLNRRPTV--AVIRLAGMIGGGPRAALSDEAIGPVIEKAFARGKPVAVALVINSPGGSPV 61
Query: 113 KGSPYAADKRR 123
+ S AA RR
Sbjct: 62 QSSLIAARIRR 72
>UniRef50_Q9RBP7 Cluster: Cold shock protein 7.4; n=2;
Rhodococcus|Rep: Cold shock protein 7.4 - Rhodococcus
sp. 7/1
Length = 57
Score = 33.5 bits (73), Expect = 5.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 43 KWFNVKSGYGFINRNDTKEDVFVHQTAI 70
+W+N + G+G + +D +D FVH TA+
Sbjct: 3 RWYNAEKGFGCLTPDDGSKDCFVHFTAL 30
>UniRef50_A0CIJ2 Cluster: Chromosome undetermined scaffold_19, whole
genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_19,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 433
Score = 33.5 bits (73), Expect = 5.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAV 79
+G +K+F+ + YGFI ++ K D+FVH + + K V
Sbjct: 346 TGRLKFFDEQKNYGFIVMDEDKSDIFVHLDDLQKAGVTKEV 386
>UniRef50_UPI000050F90E Cluster: COG1278: Cold shock proteins;
n=1; Brevibacterium linens BL2|Rep: COG1278: Cold shock
proteins - Brevibacterium linens BL2
Length = 126
Score = 33.1 bits (72), Expect = 7.2
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG 98
+G VKWF+V G+GF+ D + F+H + + P A V G +++ VV +G
Sbjct: 3 TGRVKWFDVDKGFGFVIAEDGSQ-AFLHSSVL----PEDA--EVTKGTRLDYDVVDSRRG 55
>UniRef50_Q6SK65 Cluster: Peptide synthetase; n=5; cellular
organisms|Rep: Peptide synthetase - Arthrobacter
aurescens
Length = 1407
Score = 33.1 bits (72), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGD 84
+G + V G++NR+D E VF+ RNNP + GD
Sbjct: 387 TGEIGLAGVGLAKGYVNRDDLTEKVFIPDFLAIRNNPSARIYRTGD 432
>UniRef50_A3S070 Cluster: Cold shock protein; n=1; Ralstonia
solanacearum UW551|Rep: Cold shock protein - Ralstonia
solanacearum UW551
Length = 82
Score = 33.1 bits (72), Expect = 7.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 39 SGTVKWFNVKSGYGFINRNDTKEDVF 64
+GTVKWFN G+GFI + D+F
Sbjct: 45 TGTVKWFNETKGFGFITPDGGGADLF 70
>UniRef50_Q89KY2 Cluster: Bll4766 protein; n=5;
Bradyrhizobiaceae|Rep: Bll4766 protein - Bradyrhizobium
japonicum
Length = 743
Score = 32.7 bits (71), Expect = 9.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 76 RKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGS 115
R R++GDG+ +G AG +G GGE V G+
Sbjct: 52 RTRARAIGDGDTARLRAPSGAPAGNGAGSSGSGGEAVAGN 91
>UniRef50_Q5YWN0 Cluster: Putative uncharacterized protein; n=1;
Nocardia farcinica|Rep: Putative uncharacterized protein
- Nocardia farcinica
Length = 441
Score = 32.7 bits (71), Expect = 9.5
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 52 GFIN-RNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTG 106
G IN R+D +D+ H R P V VG+ A+ FAV A G++AA + G
Sbjct: 372 GAINLRDDLLDDMLTHGVPFPRGRPVVFVCPVGE-VALRFAVRARRAGYDAASLDG 426
>UniRef50_Q84IJ3 Cluster: Cold shock protein; n=1;
Janthinobacterium sp. J3|Rep: Cold shock protein -
Janthinobacterium sp. J3
Length = 174
Score = 32.7 bits (71), Expect = 9.5
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 37 KVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSV 82
++ G V +N + G+GFI +N T E F+H +A+ + R + S+
Sbjct: 2 RLQGRVIEWNDERGFGFIIQNGTSERTFLHISALRKTKGRPLLGSL 47
>UniRef50_Q6XYV4 Cluster: Transcriptional regulator; n=2;
Spiroplasma|Rep: Transcriptional regulator - Spiroplasma
kunkelii
Length = 271
Score = 32.7 bits (71), Expect = 9.5
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 50 GYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VAGEKGFEAAGVTG 106
G+ N N+ +ED+ V + +N+ A GD E+V A+ +A EKG ++G
Sbjct: 146 GFNAFNLNENEEDLMVRSRIMNKNDLILAYSLFGDNESVNKALTIAKEKGVTIVVISG 203
>UniRef50_A4V785 Cluster: Putative cold shock domain transmembrane
protein; n=1; Pseudomonas fluorescens SBW25|Rep:
Putative cold shock domain transmembrane protein -
Pseudomonas fluorescens SBW25
Length = 282
Score = 32.7 bits (71), Expect = 9.5
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
+ A + G V F GYGFI+ D E FVHQ + P + G+ V F
Sbjct: 20 IAAGSIEGEVISFVASKGYGFIS-GDDGERYFVHQKDVKGGEP------LTSGQRVTFVP 72
Query: 93 VAGEKGFEAAGVTGPGGEP 111
KG +A V PG P
Sbjct: 73 TPSPKGSKARHVL-PGIGP 90
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.309 0.126 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,987,503
Number of Sequences: 1657284
Number of extensions: 5070376
Number of successful extensions: 11461
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 11208
Number of HSP's gapped (non-prelim): 235
length of query: 259
length of database: 575,637,011
effective HSP length: 99
effective length of query: 160
effective length of database: 411,565,895
effective search space: 65850543200
effective search space used: 65850543200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 71 (32.7 bits)
- SilkBase 1999-2023 -