GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000526-TA|BGIBMGA000526-PA|IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold, IPR011129|Cold
shock protein
         (259 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

 ***** No hits found ******

  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,195
Number of Sequences: 5004
Number of extensions: 17062
Number of successful extensions: 29
Number of sequences better than 10.0: 0
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 0
length of query: 259
length of database: 2,362,478
effective HSP length: 71
effective length of query: 188
effective length of database: 2,007,194
effective search space: 377352472
effective search space used: 377352472
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 53 (25.4 bits)