Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000526-TA|BGIBMGA000526-PA|IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold, IPR011129|Cold
shock protein
(259 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 73 2e-13
02_01_0158 - 1103461-1104186 73 2e-13
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 2.1
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 29 3.7
04_04_1582 - 34590698-34591199,34593849-34594690 29 3.7
03_01_0483 + 3689155-3689814 29 4.9
01_06_0756 - 31731607-31731752,31732368-31732467,31732716-317329... 28 6.5
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 8.6
>08_01_0202 - 1638978-1639571
Length = 197
Score = 73.3 bits (172), Expect = 2e-13
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 95 GEKG-FEAAGVTGPGGEPVK-GSPYAADKRRGY 125
G G +A VT PGG + GS + RGY
Sbjct: 59 GNDGRTKAVDVTAPGGGALTGGSRPSGGGDRGY 91
>02_01_0158 - 1103461-1104186
Length = 241
Score = 72.9 bits (171), Expect = 2e-13
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 95 GEKG-FEAAGVTGPGGEPVKG 114
E G +A VTGP G VKG
Sbjct: 60 SEDGRTKAVDVTGPDGSFVKG 80
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 85 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 114
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 29.1 bits (62), Expect = 3.7
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 44 WFNVKSGYGF-INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGE--------AVEFAVVA 94
W NV SG R +E V R +P +A + G E VA
Sbjct: 8 WINVSSGLDSGRQRGRRREGALVAWGGAQRTSPVEAAARMESGGWHRRTSMIVREELEVA 67
Query: 95 GE----KGFEAAGVTGPGGEPVKGSPYAADKRRG 124
G+ G EA G +GPGGE D RRG
Sbjct: 68 GDGRRASGVEAPGGSGPGGERTMAPANIDDSRRG 101
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 83 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 123
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 83 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 124
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 83 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 124
GDG + V G +AA G G +PV+GS +D RG
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARG 121
>01_06_0756 -
31731607-31731752,31732368-31732467,31732716-31732943,
31733390-31733474,31733583-31733662,31733755-31733826,
31733964-31734058,31735442-31735523,31735646-31735927
Length = 389
Score = 28.3 bits (60), Expect = 6.5
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 33 VIAEKVSGTVKWFNVKSGYGF--INRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEF 90
+++EK GT +V+S + +N N + ED+ HQ A+ + +S G G+ +
Sbjct: 281 MVSEKNGGTD---SVESAFDNENVNSNISHEDMHQHQKVNAKGGRKGRYKSQGRGQIQQN 337
Query: 91 AVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 125
G A + +P+ G P D RG+
Sbjct: 338 TSGQGHVSSPATSGSDHVNKPIPG-PRMPDGTRGF 371
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/38 (44%), Positives = 17/38 (44%)
Query: 79 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 116
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.309 0.126 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,082,435
Number of Sequences: 37544
Number of extensions: 138184
Number of successful extensions: 360
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 10
length of query: 259
length of database: 14,793,348
effective HSP length: 81
effective length of query: 178
effective length of database: 11,752,284
effective search space: 2091906552
effective search space used: 2091906552
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)
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