GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000526-TA|BGIBMGA000526-PA|IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold, IPR011129|Cold
shock protein
         (259 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p pro...   166   2e-41
AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA...   166   2e-41
U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein ...   160   2e-39
AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p pro...    62   1e-09
AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding ...    62   1e-09
AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA...    62   1e-09
AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p pro...    32   0.69 
AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB...    32   0.69 
AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA...    32   0.69 
BT029040-1|ABJ16973.1|  460|Drosophila melanogaster IP03738p pro...    29   6.4  

>AY061440-1|AAL28988.1|  352|Drosophila melanogaster LD37574p
           protein.
          Length = 352

 Score =  166 bits (404), Expect = 2e-41
 Identities = 77/93 (82%), Positives = 84/93 (90%)

Query: 33  VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 93  VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 125
           V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>AE014296-2093|AAF49961.3|  352|Drosophila melanogaster CG5654-PA
           protein.
          Length = 352

 Score =  166 bits (404), Expect = 2e-41
 Identities = 77/93 (82%), Positives = 84/93 (90%)

Query: 33  VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIARNNP+KAVRSVGDGE VEF V
Sbjct: 57  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSVGDGEVVEFDV 116

Query: 93  VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 125
           V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>U49120-1|AAB94634.1|  359|Drosophila melanogaster Y-box protein
           protein.
          Length = 359

 Score =  160 bits (388), Expect = 2e-39
 Identities = 76/93 (81%), Positives = 83/93 (89%), Gaps = 1/93 (1%)

Query: 33  VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
           VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AIA NNP+KAVRSVGDGE VEF V
Sbjct: 58  VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIA-NNPKKAVRSVGDGEVVEFDV 116

Query: 93  VAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGY 125
           V GEKG EAA VTGP GEPV+GS +AADKRR +
Sbjct: 117 VIGEKGNEAANVTGPSGEPVRGSQFAADKRRNF 149


>AY118360-1|AAM48389.1|  195|Drosophila melanogaster RE05342p
           protein.
          Length = 195

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 40  GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I  +      RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96

Query: 100 EAAGVTGPGGEPVKGSPY 117
           EA  V+   G   +GS Y
Sbjct: 97  EATRVSSRHGGSCQGSTY 114


>AF521096-1|AAM77748.1|  195|Drosophila melanogaster RNA-binding
           protein LIN-28 protein.
          Length = 195

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 40  GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I  +      RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96

Query: 100 EAAGVTGPGGEPVKGSPY 117
           EA  V+   G   +GS Y
Sbjct: 97  EATRVSSRHGGSCQGSTY 114


>AE014296-983|AAF50758.2|  195|Drosophila melanogaster CG17334-PA
           protein.
          Length = 195

 Score = 61.7 bits (143), Expect = 1e-09
 Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 40  GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGF 99
           G  KWFNV  G+GF+  ND  ++VFVHQ+ I  +      RS+G+ E VEF      +G 
Sbjct: 41  GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMS----GFRSLGEQEEVEFECQRTSRGL 96

Query: 100 EAAGVTGPGGEPVKGSPY 117
           EA  V+   G   +GS Y
Sbjct: 97  EATRVSSRHGGSCQGSTY 114


>AY060441-1|AAL25480.1|  143|Drosophila melanogaster LD47312p
          protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 70
          V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2798|AAN11740.1|  143|Drosophila melanogaster CG9705-PB,
          isoform B protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 70
          V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>AE014296-2797|AAF49414.1|  143|Drosophila melanogaster CG9705-PA,
          isoform A protein.
          Length = 143

 Score = 32.3 bits (70), Expect = 0.69
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 38 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 70
          V+G VK F+   G+GFI  N   EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87


>BT029040-1|ABJ16973.1|  460|Drosophila melanogaster IP03738p
           protein.
          Length = 460

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 70  IARNNPRKAVRSVGDGEAVEFAVVAGE-KGFEAAGVTGPGGEPVKGSPYAAD 120
           +AR  P        DG  V  AV+A +  G   AG T   G PV G+  AAD
Sbjct: 202 VARAVPATDGNGAPDGVPVAGAVLATDGNGAPVAGATDGNGAPVAGAVPAAD 253


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.309    0.126    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,024,262
Number of Sequences: 52641
Number of extensions: 226406
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 613
Number of HSP's gapped (non-prelim): 10
length of query: 259
length of database: 24,830,863
effective HSP length: 83
effective length of query: 176
effective length of database: 20,461,660
effective search space: 3601252160
effective search space used: 3601252160
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 61 (28.7 bits)