Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000526-TA|BGIBMGA000526-PA|IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold, IPR011129|Cold
shock protein
(259 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 135 3e-32
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 89 4e-18
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 85 6e-17
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 84 8e-17
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 84 8e-17
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 56 3e-08
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 56 3e-08
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 56 3e-08
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 135 bits (326), Expect = 3e-32
Identities = 62/89 (69%), Positives = 69/89 (77%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 92
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPYAADK 121
V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 76 VEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 88.6 bits (210), Expect = 4e-18
Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 34 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 92
I + G VKW++V YGFI+RND ++D+FVHQTAIA++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 93 VAGEKGFEAAGVTGPGGEPVKGSPY 117
V G+ G EAA VTGP G+ V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 84.6 bits (200), Expect = 6e-17
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 91
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI++++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 92 VVAGEKGFEAAGVTGPGGEPVKGSPY 117
+V G+ G EAA VTGP G V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 84.2 bits (199), Expect = 8e-17
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 88
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 89 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 118
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 84.2 bits (199), Expect = 8e-17
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Query: 33 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 88
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 89 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 118
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 97
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 98 GFEAAGVTGP-GGEPVKGS 115
G EA V+G G+ +KGS
Sbjct: 80 GREAYAVSGEVEGQGLKGS 98
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 97
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 98 GFEAAGVTGP-GGEPVKGS 115
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 97
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 98 GFEAAGVTGP-GGEPVKGS 115
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 55.6 bits (128), Expect = 3e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 40 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 97
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 98 GFEAAGVTGP-GGEPVKGS 115
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.309 0.126 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,374,538
Number of Sequences: 27539
Number of extensions: 105302
Number of successful extensions: 242
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 9
length of query: 259
length of database: 12,573,161
effective HSP length: 80
effective length of query: 179
effective length of database: 10,370,041
effective search space: 1856237339
effective search space used: 1856237339
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 59 (27.9 bits)
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