Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000526-TA|BGIBMGA000526-PA|IPR002059|Cold-shock protein,
DNA-binding, IPR008994|Nucleic acid-binding, OB-fold, IPR011129|Cold
shock protein
(259 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 65 4e-11
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 63 2e-10
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 62 3e-10
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 56 2e-08
At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook pr... 29 4.1
At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook pr... 29 4.1
At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook pr... 29 4.1
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 65.3 bits (152), Expect = 4e-11
Identities = 34/80 (42%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
A + +G V WFN GYGFI +D ++FVHQ++I + RS+ G+AVEFA+
Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIV----SEGYRSLTVGDAVEFAITQ 63
Query: 95 GEKG-FEAAGVTGPGGEPVK 113
G G +A VT PGG +K
Sbjct: 64 GSDGKTKAVNVTAPGGGSLK 83
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAG 95
++ GTVKWF+ + G+GFI +D +D+FVHQ++I + RS+ E+VEF V
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIR----SEGFRSLAAEESVEFDVEVD 68
Query: 96 EKGF-EAAGVTGPGGEPVKGS 115
G +A V+GP G PV+G+
Sbjct: 69 NSGRPKAIEVSGPDGAPVQGN 89
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 62.5 bits (145), Expect = 3e-10
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 5/81 (6%)
Query: 36 EKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV-VA 94
E+ G+VKWF+ + G+GFI +D +D+FVHQ++I + RS+ EAVEF V +
Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIR----SEGFRSLAAEEAVEFEVEID 64
Query: 95 GEKGFEAAGVTGPGGEPVKGS 115
+A V+GP G PV+G+
Sbjct: 65 NNNRPKAIDVSGPDGAPVQGN 85
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 35 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 94
A + G V WF+ GYGFI +D E++FVHQ++I + RS+ GE+VE+ +
Sbjct: 8 AARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSD----GFRSLTLGESVEYEIAL 63
Query: 95 GEKG-FEAAGVTGPGG 109
G G +A VT PGG
Sbjct: 64 GSDGKTKAIEVTAPGG 79
>At2g33620.3 68415.m04122 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 81 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 129
S G+ + + GE G G+TG G EPVK KRRG R+Y
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKY 106
>At2g33620.2 68415.m04121 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 81 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 129
S G+ + + GE G G+TG G EPVK KRRG R+Y
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKY 106
>At2g33620.1 68415.m04120 DNA-binding family protein / AT-hook
protein 1 (AHP1) identical to AT-hook protein 1
[Arabidopsis thaliana] gi|2598227|emb|CAA10857
Length = 351
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 81 SVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRGYHRQY 129
S G+ + + GE G G+TG G EPVK KRRG R+Y
Sbjct: 69 SAGENSVLNMNLPGGESG----GMTGTGSEPVK-------KRRGRPRKY 106
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.126 0.357
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,260,608
Number of Sequences: 28952
Number of extensions: 100976
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 7
length of query: 259
length of database: 12,070,560
effective HSP length: 80
effective length of query: 179
effective length of database: 9,754,400
effective search space: 1746037600
effective search space used: 1746037600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 58 (27.5 bits)
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