Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000525-TA|BGIBMGA000525-PA|undefined
         (60 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    24   2.1  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    24   2.7  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    23   4.8  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 9   VQPVLF-YPYGRFPVSWNASNQHMKRERSNTQALESNPN 46
           + P+LF YP   +PV+  +S QH    R +    + + N
Sbjct: 396 LSPLLFDYPNSLYPVNNTSSEQHHNSYRGSVSNSQPSGN 434


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 16  PYGRFPVSWNASNQHMKRERSNTQALESNP 45
           P  +FPV+ N +    K   SN + L +NP
Sbjct: 133 PESKFPVAHNDAIDSFKWVASNIEKLGANP 162


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 2/29 (6%)

Query: 3   NDPYLYVQPVLFYPYGRFPVSWNASNQHM 31
           N+PY+ +QP +  PY    ++++A+  H+
Sbjct: 425 NNPYMVLQPDIQSPYSL--IAYHANGLHV 451


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 332,402
Number of Sequences: 5004
Number of extensions: 10953
Number of successful extensions: 26
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 3
length of query: 60
length of database: 2,362,478
effective HSP length: 41
effective length of query: 19
effective length of database: 2,157,314
effective search space: 40988966
effective search space used: 40988966
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)