Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000525-TA|BGIBMGA000525-PA|undefined
         (60 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)              28   1.3  
SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.9  
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.1  
SB_45928| Best HMM Match : Uso1_p115_C (HMM E-Value=0.54)              25   6.7  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.7  

>SB_45137| Best HMM Match : Involucrin2 (HMM E-Value=0.59)
          Length = 421

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 5   PYLYVQPV-LFYPYGRFPVSWNASNQHMKRERSN 37
           PY Y  P  L  PYG +PV +     H+K+ R+N
Sbjct: 388 PYGYSVPCSLQTPYG-YPVPYGLQTNHLKKSRNN 420


>SB_18254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 26  ASNQHMKRERSNTQALESNPNCL 48
           ASN H+ RE++N+   ++  NCL
Sbjct: 193 ASNNHLVREKNNSTVTKAFNNCL 215


>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)

Query: 2   VNDPYLYVQPVLFYPYGRFPVSWNASNQHMKRERSNTQALESN 44
           V DP +Y  PVL   Y +  V+ NA++   + + S    L  N
Sbjct: 394 VQDPLMYAVPVLVENYKKSGVAVNANSDQSRWQLSRRFFLVEN 436


>SB_45928| Best HMM Match : Uso1_p115_C (HMM E-Value=0.54)
          Length = 500

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 25  NASNQHMKRERSNTQALESNPNCLYSGRSL 54
           N  NQ    ER N  ALE+N N ++    L
Sbjct: 448 NGGNQDAVEERKNHMALENNYNLVWDENHL 477


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 12  VLFYPYGRFPVSWNASNQHM----KRERSNTQALESNPNCLYSGRSLFHYAMR 60
           VL+Y Y  F V  +   QH+    + +R  TQ+L  N    Y GR++  Y++R
Sbjct: 58  VLYYFYTTFYV--HKEKQHIVILYEGKRQVTQSLGLNNVSSYKGRTIQRYSLR 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,494
Number of Sequences: 59808
Number of extensions: 68926
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 8
length of query: 60
length of database: 16,821,457
effective HSP length: 39
effective length of query: 21
effective length of database: 14,488,945
effective search space: 304267845
effective search space used: 304267845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)