Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000525-TA|BGIBMGA000525-PA|undefined
         (60 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p...    25   4.8  
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p...    25   4.8  
At5g43290.1 68418.m05291 WRKY family transcription factor contai...    25   6.3  
At5g14230.1 68418.m01663 ankyrin repeat family protein contains ...    25   6.3  
At2g30480.2 68415.m03713 expressed protein                             25   8.4  
At2g30480.1 68415.m03712 expressed protein                             25   8.4  
At1g61710.1 68414.m06960 DC1 domain-containing protein contains ...    25   8.4  

>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 909

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 15  YPYGRFPVSWNASNQHMKRER---SNTQALESN 44
           Y Y RFP S  +  Q  KR++   + + ALESN
Sbjct: 482 YTYDRFPASVRSEEQEEKRKQILAAASGALESN 514


>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
           protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
           domain; contains Pfam PF00400: WD domain, G-beta repeat
           (8 copies); identical to stomatal cytokinesis defective
           [Arabidopsis thaliana] GI:19743728; supporting cDNA
           gi|19743727|gb|AY082605.1|; PMID 12874123
          Length = 1187

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 15  YPYGRFPVSWNASNQHMKRER---SNTQALESN 44
           Y Y RFP S  +  Q  KR++   + + ALESN
Sbjct: 482 YTYDRFPASVRSEEQEEKRKQILAAASGALESN 514


>At5g43290.1 68418.m05291 WRKY family transcription factor
          contains Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 274

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 2  VNDPYLYVQPVLFYPYGRFPVSWNASNQHMKRERSNTQALESNP 45
          V DP++Y  P+ F P  +  +     N+     +  T  L S P
Sbjct: 17 VEDPFVYEPPLFFLPQDQHHMHGLMPNEDFIANKFVTSTLYSGP 60


>At5g14230.1 68418.m01663 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 591

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/16 (50%), Positives = 14/16 (87%)

Query: 44  NPNCLYSGRSLFHYAM 59
           +PN L++GR+L H+A+
Sbjct: 137 SPNALHNGRTLLHHAV 152


>At2g30480.2 68415.m03713 expressed protein
          Length = 566

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 24  WNASNQHMKRE-RSNTQALESNPNCLYS 50
           W   +QHMKR+ RS  Q   SN   L S
Sbjct: 396 WEVDDQHMKRQVRSGKQGRLSNSGKLKS 423


>At2g30480.1 68415.m03712 expressed protein
          Length = 621

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 24  WNASNQHMKRE-RSNTQALESNPNCLYS 50
           W   +QHMKR+ RS  Q   SN   L S
Sbjct: 396 WEVDDQHMKRQVRSGKQGRLSNSGKLKS 423


>At1g61710.1 68414.m06960 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 402

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 12  VLFYPYGRFPVSWNASNQHMKRERSNTQALESN 44
           ++F  + R  ++ NAS+ H+K     T ++ SN
Sbjct: 104 IIFVTFARKSITKNASSLHLKSNTLITLSIRSN 136


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,898
Number of Sequences: 28952
Number of extensions: 49163
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 7
length of query: 60
length of database: 12,070,560
effective HSP length: 40
effective length of query: 20
effective length of database: 10,912,480
effective search space: 218249600
effective search space used: 218249600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)