GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000525-TA|BGIBMGA000525-PA|undefined
         (60 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9GZV3 Cluster: High affinity choline transporter 1; n=...    31   4.5  
UniRef50_Q2UMA5 Cluster: Predicted protein; n=6; Trichocomaceae|...    30   7.9  

>UniRef50_Q9GZV3 Cluster: High affinity choline transporter 1; n=24;
           Euteleostomi|Rep: High affinity choline transporter 1 -
           Homo sapiens (Human)
          Length = 580

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 4   DPYLYVQPVLFYPYGRFPVSWNASNQ 29
           +PYLY+QP++FYP G +P      NQ
Sbjct: 451 EPYLYLQPLIFYP-GYYPDDNGIYNQ 475


>UniRef50_Q2UMA5 Cluster: Predicted protein; n=6;
          Trichocomaceae|Rep: Predicted protein - Aspergillus
          oryzae
          Length = 444

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 11 PVLFY---PYGRFPVSWNASNQHMKRERSNTQALESNP 45
          P+ FY   P    P SWN  NQ ++R++   Q +E NP
Sbjct: 29 PLPFYGSLPAAPKPPSWNLRNQPVQRQKPIEQVVERNP 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,160,710
Number of Sequences: 1657284
Number of extensions: 2267439
Number of successful extensions: 4073
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4073
Number of HSP's gapped (non-prelim): 2
length of query: 60
length of database: 575,637,011
effective HSP length: 40
effective length of query: 20
effective length of database: 509,345,651
effective search space: 10186913020
effective search space used: 10186913020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)