GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000525-TA|BGIBMGA000525-PA|undefined
         (60 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0435 - 8406262-8406419,8406499-8406547,8406577-8407458,840...    25   5.8  
01_01_1155 + 9191249-9192439                                           25   5.8  

>03_02_0435 -
           8406262-8406419,8406499-8406547,8406577-8407458,
           8408976-8409127,8410346-8410616
          Length = 503

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 6   YLYVQPVLFYPYGRFPVSWNASNQHMKRERSNTQALESNPNCLY 49
           YL V PV+   Y  F     A  +H +R  +      SNP   Y
Sbjct: 372 YLVVVPVVVVIYSLFAEKAVACLRHSRRTENTVNPTNSNPESGY 415


>01_01_1155 + 9191249-9192439
          Length = 396

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 22  VSWNASNQHMKRERSNTQALE 42
           VSW AS  H++R R  T  +E
Sbjct: 340 VSWAASRLHVRRRRVRTSKIE 360


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,194
Number of Sequences: 37544
Number of extensions: 54997
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 2
length of query: 60
length of database: 14,793,348
effective HSP length: 40
effective length of query: 20
effective length of database: 13,291,588
effective search space: 265831760
effective search space used: 265831760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)