Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000525-TA|BGIBMGA000525-PA|undefined
(60 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC111525-1|AAI11526.1| 580|Homo sapiens solute carrier family 5... 31 0.57
BC111524-1|AAI11525.1| 333|Homo sapiens SLC5A7 protein protein. 31 0.57
AJ401466-1|CAC03717.1| 580|Homo sapiens high affinity choline t... 31 0.57
AJ308378-1|CAC88115.1| 580|Homo sapiens high affinity choline t... 31 0.57
AF276871-1|AAG25940.1| 580|Homo sapiens high affinity choline t... 31 0.57
AC009963-1|AAY14927.1| 580|Homo sapiens unknown protein. 31 0.57
AB043997-1|BAB18161.1| 580|Homo sapiens high-affinity choline t... 31 0.57
U14187-1|AAC50078.1| 238|Homo sapiens LERK-3 protein. 29 3.0
L37360-1|AAA52368.1| 234|Homo sapiens EHK1 receptor tyrosine ki... 29 3.0
BC110406-1|AAI10407.1| 238|Homo sapiens ephrin-A3 protein. 29 3.0
BC017722-1|AAH17722.1| 238|Homo sapiens ephrin-A3 protein. 29 3.0
AL691442-3|CAI15318.1| 238|Homo sapiens ephrin-A3 protein. 29 3.0
L29222-1|AAB59459.1| 136|Homo sapiens clk1 protein. 28 5.3
L29219-1|AAA61480.1| 484|Homo sapiens clk1 protein. 28 5.3
BC031549-1|AAH31549.1| 484|Homo sapiens CDC-like kinase 1 protein. 28 5.3
BC028149-1|AAH28149.1| 136|Homo sapiens CDC-like kinase 1 protein. 28 5.3
AC005037-5|AAY14722.1| 484|Homo sapiens unknown protein. 28 5.3
>BC111525-1|AAI11526.1| 580|Homo sapiens solute carrier family 5
(choline transporter), member 7 protein.
Length = 580
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 4 DPYLYVQPVLFYPYGRFPVSWNASNQ 29
+PYLY+QP++FYP G +P NQ
Sbjct: 451 EPYLYLQPLIFYP-GYYPDDNGIYNQ 475
>BC111524-1|AAI11525.1| 333|Homo sapiens SLC5A7 protein protein.
Length = 333
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 4 DPYLYVQPVLFYPYGRFPVSWNASNQ 29
+PYLY+QP++FYP G +P NQ
Sbjct: 204 EPYLYLQPLIFYP-GYYPDDNGIYNQ 228
>AJ401466-1|CAC03717.1| 580|Homo sapiens high affinity choline
transporter protein.
Length = 580
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 4 DPYLYVQPVLFYPYGRFPVSWNASNQ 29
+PYLY+QP++FYP G +P NQ
Sbjct: 451 EPYLYLQPLIFYP-GYYPDDNGIYNQ 475
>AJ308378-1|CAC88115.1| 580|Homo sapiens high affinity choline
transporter protein.
Length = 580
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 4 DPYLYVQPVLFYPYGRFPVSWNASNQ 29
+PYLY+QP++FYP G +P NQ
Sbjct: 451 EPYLYLQPLIFYP-GYYPDDNGIYNQ 475
>AF276871-1|AAG25940.1| 580|Homo sapiens high affinity choline
transporter protein.
Length = 580
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 4 DPYLYVQPVLFYPYGRFPVSWNASNQ 29
+PYLY+QP++FYP G +P NQ
Sbjct: 451 EPYLYLQPLIFYP-GYYPDDNGIYNQ 475
>AC009963-1|AAY14927.1| 580|Homo sapiens unknown protein.
Length = 580
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 4 DPYLYVQPVLFYPYGRFPVSWNASNQ 29
+PYLY+QP++FYP G +P NQ
Sbjct: 451 EPYLYLQPLIFYP-GYYPDDNGIYNQ 475
>AB043997-1|BAB18161.1| 580|Homo sapiens high-affinity choline
transporter CHT1 protein.
Length = 580
Score = 31.1 bits (67), Expect = 0.57
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 4 DPYLYVQPVLFYPYGRFPVSWNASNQ 29
+PYLY+QP++FYP G +P NQ
Sbjct: 451 EPYLYLQPLIFYP-GYYPDDNGIYNQ 475
>U14187-1|AAC50078.1| 238|Homo sapiens LERK-3 protein.
Length = 238
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 19 RFPVSWNASNQHMKRERSNTQ 39
R V WN+SNQH++RE Q
Sbjct: 32 RHAVYWNSSNQHLRREGYTVQ 52
>L37360-1|AAA52368.1| 234|Homo sapiens EHK1 receptor tyrosine
kinase ligand protein.
Length = 234
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 19 RFPVSWNASNQHMKRERSNTQ 39
R V WN+SNQH++RE Q
Sbjct: 32 RHAVYWNSSNQHLRREGYTVQ 52
>BC110406-1|AAI10407.1| 238|Homo sapiens ephrin-A3 protein.
Length = 238
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 19 RFPVSWNASNQHMKRERSNTQ 39
R V WN+SNQH++RE Q
Sbjct: 32 RHAVYWNSSNQHLRREGYTVQ 52
>BC017722-1|AAH17722.1| 238|Homo sapiens ephrin-A3 protein.
Length = 238
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 19 RFPVSWNASNQHMKRERSNTQ 39
R V WN+SNQH++RE Q
Sbjct: 32 RHAVYWNSSNQHLRREGYTVQ 52
>AL691442-3|CAI15318.1| 238|Homo sapiens ephrin-A3 protein.
Length = 238
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 19 RFPVSWNASNQHMKRERSNTQ 39
R V WN+SNQH++RE Q
Sbjct: 32 RHAVYWNSSNQHLRREGYTVQ 52
>L29222-1|AAB59459.1| 136|Homo sapiens clk1 protein.
Length = 136
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 24 WNASNQHMKRERSNTQALESNPNCLYS 50
W +S+ H +R+RS++ A E N C Y+
Sbjct: 22 WRSSSSHKRRKRSHSSAQE-NKRCKYN 47
>L29219-1|AAA61480.1| 484|Homo sapiens clk1 protein.
Length = 484
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 24 WNASNQHMKRERSNTQALESNPNCLYS 50
W +S+ H +R+RS++ A E N C Y+
Sbjct: 22 WRSSSSHKRRKRSHSSAQE-NKRCKYN 47
>BC031549-1|AAH31549.1| 484|Homo sapiens CDC-like kinase 1
protein.
Length = 484
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 24 WNASNQHMKRERSNTQALESNPNCLYS 50
W +S+ H +R+RS++ A E N C Y+
Sbjct: 22 WRSSSSHKRRKRSHSSAQE-NKRCKYN 47
>BC028149-1|AAH28149.1| 136|Homo sapiens CDC-like kinase 1
protein.
Length = 136
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 24 WNASNQHMKRERSNTQALESNPNCLYS 50
W +S+ H +R+RS++ A E N C Y+
Sbjct: 22 WRSSSSHKRRKRSHSSAQE-NKRCKYN 47
>AC005037-5|AAY14722.1| 484|Homo sapiens unknown protein.
Length = 484
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 24 WNASNQHMKRERSNTQALESNPNCLYS 50
W +S+ H +R+RS++ A E N C Y+
Sbjct: 22 WRSSSSHKRRKRSHSSAQE-NKRCKYN 47
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.322 0.134 0.435
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,144,167
Number of Sequences: 224733
Number of extensions: 315497
Number of successful extensions: 543
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 17
length of query: 60
length of database: 73,234,838
effective HSP length: 40
effective length of query: 20
effective length of database: 64,245,518
effective search space: 1284910360
effective search space used: 1284910360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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