GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000525-TA|BGIBMGA000525-PA|undefined
         (60 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    26   2.7  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    26   2.7  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    26   2.7  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    26   2.7  
AF067937-5|AAF99917.2|  422|Caenorhabditis elegans Hypothetical ...    26   3.6  
Z81030-2|CAB02704.2|  343|Caenorhabditis elegans Hypothetical pr...    25   4.8  
Z48717-6|CAA88608.2|  124|Caenorhabditis elegans Hypothetical pr...    25   4.8  
U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical pr...    25   4.8  
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    25   6.3  

>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 24  WNASNQHMKRERSNTQALESNPN 46
           W++SN+H +R RS + + E + N
Sbjct: 89  WSSSNRHSRRRRSRSYSRERDRN 111


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 24  WNASNQHMKRERSNTQALESNPN 46
           W++SN+H +R RS + + E + N
Sbjct: 117 WSSSNRHSRRRRSRSYSRERDRN 139


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 24  WNASNQHMKRERSNTQALESNPN 46
           W++SN+H +R RS + + E + N
Sbjct: 175 WSSSNRHSRRRRSRSYSRERDRN 197


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 24  WNASNQHMKRERSNTQALESNPN 46
           W++SN+H +R RS + + E + N
Sbjct: 176 WSSSNRHSRRRRSRSYSRERDRN 198


>AF067937-5|AAF99917.2|  422|Caenorhabditis elegans Hypothetical
           protein F22F7.2 protein.
          Length = 422

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 9   VQPVLFYPYGRFPVSWNA 26
           V+PV F P+ RF   WNA
Sbjct: 263 VKPVRFTPFTRFESRWNA 280


>Z81030-2|CAB02704.2|  343|Caenorhabditis elegans Hypothetical
           protein C01G10.2 protein.
          Length = 343

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 24  WNASNQHMKRERSNTQALESNPNCLYSG 51
           WN + +H+ R  ++   L SN +  Y G
Sbjct: 150 WNVATEHLSRSENSNFMLFSNEHLAYIG 177


>Z48717-6|CAA88608.2|  124|Caenorhabditis elegans Hypothetical
           protein T10B9.9 protein.
          Length = 124

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 6   YLYVQPVLFYPYGRFPVSWNASNQHMKRERSNTQALESNPNCLYSGR 52
           Y+  Q  LF   GR  VS +A  Q   R+RS+ + + S  +CL+  R
Sbjct: 57  YIGSQMRLFDDRGR-EVSCDAEKQQEIRQRSDRRCIFSPIHCLFDRR 102


>U12965-9|AAA20605.3|  522|Caenorhabditis elegans Hypothetical
           protein F23F12.3 protein.
          Length = 522

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 22  VSWNASNQHMKRERSNTQALESNPNCLYSGRSLF 55
           +SW +   +++RE   T+ +E     +Y+ R LF
Sbjct: 266 ISWLSGISYVEREDRRTEKIEEKDTKVYTIRDLF 299


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
          transcriptase protein.
          Length = 1066

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 30 HMKRERSNTQALESNPNCL 48
          H +  R  T AL SNP+CL
Sbjct: 49 HYRVSRDTTFALNSNPSCL 67


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,100
Number of Sequences: 27539
Number of extensions: 52674
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 9
length of query: 60
length of database: 12,573,161
effective HSP length: 41
effective length of query: 19
effective length of database: 11,444,062
effective search space: 217437178
effective search space used: 217437178
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)