GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000525-TA|BGIBMGA000525-PA|undefined
         (60 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   1.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    19   6.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   6.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   6.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   6.2  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    18   8.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    18   8.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease
          precursor protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 6  YLYVQPVLFYPYGRFPVSWNASNQHMKRERSNTQALESNPNC 47
          Y+Y  P    PY     +W  ++ H    + +      N NC
Sbjct: 55 YIY-NPRYPLPYSGSKCTWTITSYHRINLKCSLVEFSENKNC 95


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 3   NDPYLYVQPVLFYPYGRFPVSW 24
           N   LYV P +F    +  ++W
Sbjct: 96  NGSCLYVPPGIFKSTCKIDITW 117


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 3   NDPYLYVQPVLFYPYGRFPVSW 24
           N   LYV P +F    +  ++W
Sbjct: 164 NGSCLYVPPGIFKSTCKIDITW 185


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 3   NDPYLYVQPVLFYPYGRFPVSW 24
           N   LYV P +F    +  ++W
Sbjct: 164 NGSCLYVPPGIFKSTCKIDITW 185


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.6 bits (36), Expect = 6.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 3   NDPYLYVQPVLFYPYGRFPVSW 24
           N   LYV P +F    +  ++W
Sbjct: 133 NGTCLYVPPGIFKSTCKIDITW 154


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 7   LYVQPVLFYPYGRFPVSW 24
           LYV P +F    +  V+W
Sbjct: 100 LYVPPGIFKSTCKMDVAW 117


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 18.2 bits (35), Expect = 8.2
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 28  NQHMKRERSNTQALESNPNCL 48
           N+H   +R N + +  N   L
Sbjct: 329 NEHQSLQRQNLEMVAQNDRTL 349


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.134    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,487
Number of Sequences: 429
Number of extensions: 661
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 60
length of database: 140,377
effective HSP length: 40
effective length of query: 20
effective length of database: 123,217
effective search space:  2464340
effective search space used:  2464340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.2 bits)
S2: 35 (18.2 bits)