GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000524-TA|BGIBMGA000524-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (209 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    28   0.062
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    28   0.062
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   1.8  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.4  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 0.062
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 127 VYDVNNRDATGAAKMVRELAGYEGFLSSCRFLDDTHILTGSGDMKICVWDLEA 179
           +Y   +R  +G  K + ++AGY GFL+    +        S D+K  + +LE+
Sbjct: 94  IYTTYSRKLSGIFKYIDQMAGYTGFLAMLTSM--VMFYKRSNDLKTLLSNLES 144


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 0.062
 Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 127 VYDVNNRDATGAAKMVRELAGYEGFLSSCRFLDDTHILTGSGDMKICVWDLEA 179
           +Y   +R  +G  K + ++AGY GFL+    +        S D+K  + +LE+
Sbjct: 50  IYTTYSRKLSGIFKYIDQMAGYTGFLAMLTSM--VMFYKRSNDLKTLLSNLES 100


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 66  HYSGDSRHCVTGSLDGKLIIWDTWSGNKVQIIP 98
           +Y G  ++CV G +D    ++  W G  ++ +P
Sbjct: 255 YYQG--KNCVGGKVDETAGVYSGWEGQVLENMP 285


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 128 YDVNNRDATGAAKMVRELAGYEGFLSSCRFLDD 160
           +DV     TG A    +  G  GF   C F  D
Sbjct: 261 HDVGAPATTGIAGPFTQSPGVLGFNEICSFYSD 293


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,757
Number of Sequences: 317
Number of extensions: 1856
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 209
length of database: 114,650
effective HSP length: 54
effective length of query: 155
effective length of database: 97,532
effective search space: 15117460
effective search space used: 15117460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)