GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000524-TA|BGIBMGA000524-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (209 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF117750-1|AAD38336.1|  380|Anopheles gambiae serine protease 18...    25   1.3  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   2.9  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    23   6.7  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    23   6.7  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   6.7  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   8.9  

>AF117750-1|AAD38336.1|  380|Anopheles gambiae serine protease 18D
           protein.
          Length = 380

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 148 YEGFLSSCRFLDDTHILTGSGDMKICVWDLEAGKREMEFDA 188
           Y   L + R+  D H+  G    ++CV DL  GK   + D+
Sbjct: 289 YNNELCAERYRYDRHLRQGILSTQMCVGDLAGGKDTCQGDS 329


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 11  LKKELTDLISKVKADQEKL-ADAKLAEK 37
           L+KEL   I K K  QEKL  D K  EK
Sbjct: 897 LQKELESWIQKEKEAQEKLEEDGKRMEK 924


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 147 GYEGFLSSCRFLDD 160
           GY GF  SC+FL D
Sbjct: 188 GYCGFGDSCKFLHD 201


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 147 GYEGFLSSCRFLDD 160
           GY GF  SC+FL D
Sbjct: 188 GYCGFGDSCKFLHD 201


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 132 NRDATGAAKMVRELAGYEGFLSSCR--FLDD 160
           N   TG   ++ + AG  G LS C   FL+D
Sbjct: 518 NDSKTGTGNLLLKTAGATGHLSCCNSLFLND 548


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 79  LDGKLIIWDTWSGNKVQIIP 98
           LDG+++ +DT  G K   IP
Sbjct: 640 LDGRVLQYDTAEGVKTNAIP 659


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,261
Number of Sequences: 2123
Number of extensions: 8640
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 209
length of database: 516,269
effective HSP length: 61
effective length of query: 148
effective length of database: 386,766
effective search space: 57241368
effective search space used: 57241368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)