GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000524-TA|BGIBMGA000524-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (209 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    23   2.1  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   8.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 89  WSGNKVQIIPLRSAWVMSVAFAPSGNFVACGGMDNMCTV--YDVNNRDATGAA 139
           W GN   +I       ++ AF      V  GG+D       Y V N  + GAA
Sbjct: 73  WRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAA 125


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 89  WSGNKVQIIPLRSAWVMSVAFAPSGNFVACGGMDNMCTV--YDVNNRDATGAA 139
           W GN   +I       ++ AF      V  GG+D       Y V N  + GAA
Sbjct: 73  WRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAA 125


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 151 FLSSCRFLDDTHILTGSGDMKICVWDLEAGKREMEFD 187
           F  SC   D      G  + KIC   ++ GK+  E +
Sbjct: 253 FFESCGVADLIATCYGGRNRKICEAFVKTGKKISELE 289


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,124
Number of Sequences: 429
Number of extensions: 2274
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 209
length of database: 140,377
effective HSP length: 55
effective length of query: 154
effective length of database: 116,782
effective search space: 17984428
effective search space used: 17984428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)